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NC_049435.1__YP_009880409.1__HYP62_gp06__00006

Bact-Vir

NC_049435.1__YP_009880409.1__HYP62_gp06__00006

Identity

Accession:
NC_049435 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Aorunvirus› Ruegeria_phage_vB_RpoP-V12

TaxID: 2218611

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f32A01 3.30.1120.50 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 0.72 47.0 4.75e-01 94.0% 67.2%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.64 44.0 3.17e-01 73.1% 96.1%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 39.0 3.32e-01 71.6% 50.0%
4q7fA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 39.0 2.57e-01 73.1% 96.7%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 43.0 3.39e-01 85.1% 45.9%
2e1mC01 3.30.70.2100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 4.15e-01 83.6% 88.2%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 3.00e-01 100.0% 48.0%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.54 42.0 3.88e-01 91.0% 76.8%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 45.0 3.85e-01 92.5% 69.4%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 42.0 2.73e-01 91.0% 32.1%
4zn4A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.74e-01 100.0% 44.3%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 35.0 3.55e-01 71.6% 84.8%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.51 37.0 3.18e-01 79.1% 78.9%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.51 34.0 3.49e-01 71.6% 86.8%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 42.0 3.37e-01 89.6% 91.5%
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 43.0 3.37e-01 100.0% 66.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4130494 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.71 56.0 4.15e-01 85.1% 41.8%
4151184 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.70 58.0 4.18e-01 91.0% 38.4%
3415237 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 46.0 3.17e-01 92.5% 22.3%
3334023 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.58 41.0 3.27e-01 74.6% 66.7%
3622016 2484.5.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.58 43.0 3.64e-01 77.6% 53.3%
3380828 5.1.3.131 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Det1 0.57 49.0 3.04e-01 100.0% 42.5%
3335040 5.1.3.129 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX 0.56 40.0 4.39e-01 76.1% 98.2%
3306435 245.3.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX 0.56 40.0 4.42e-01 76.1% 100.0%
3346566 1.1.7.85 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › BRX 0.56 39.0 4.25e-01 73.1% 94.5%
3479225 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 41.0 3.67e-01 79.1% 77.0%
3320717 3433.1.1.3 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › BRX 0.56 40.0 4.37e-01 76.1% 100.0%
3955953 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 40.0 2.68e-01 77.6% 40.7%
4259150 295.1.1.46 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.56 44.0 3.50e-01 86.6% 92.6%
3918694 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.55 38.0 3.51e-01 73.1% 61.1%
4665982 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.55 39.0 3.39e-01 73.1% 94.0%
4370765 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.54 46.0 3.13e-01 100.0% 61.0%
3608163 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 38.0 2.99e-01 77.6% 46.5%
3984778 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.53 39.0 2.73e-01 79.1% 51.3%
4989783 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 44.0 2.68e-01 94.0% 52.5%