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NC_049447.1__YP_009882397.1__HYP76_gp23__00023

Bact-Vir

NC_049447.1__YP_009882397.1__HYP76_gp23__00023

Identity

Accession:
NC_049447 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-110
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.73 52.0 4.47e-01 74.7% 58.7%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 50.0 4.85e-01 74.7% 65.3%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.71 49.0 4.74e-01 72.4% 75.8%
3l4gB02 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.70 50.0 3.77e-01 74.7% 93.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 50.0 3.99e-01 74.7% 97.0%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 44.0 4.58e-01 74.7% 68.3%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 47.0 4.64e-01 72.4% 65.9%
2h6oA01 2.60.40.2800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 50.0 4.14e-01 75.9% 71.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 49.0 4.88e-01 79.3% 98.9%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.66 48.0 3.92e-01 77.0% 93.9%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.65 45.0 3.66e-01 72.4% 100.0%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 47.0 4.46e-01 75.9% 64.7%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 45.0 4.38e-01 73.6% 70.1%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 48.0 4.73e-01 82.8% 100.0%
1qhoA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 4.07e-01 73.6% 68.5%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 44.0 4.20e-01 74.7% 68.3%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 42.0 3.18e-01 71.3% 86.7%
6fhvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.15e-01 73.6% 73.5%
2vn4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.92e-01 73.6% 63.2%
2zaiB03 2.60.40.3020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 4.03e-01 74.7% 62.6%
6muwN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 41.0 3.12e-01 72.4% 93.3%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 41.0 3.12e-01 73.6% 85.4%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.97e-01 73.6% 68.3%
1auvA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 41.0 3.79e-01 72.4% 63.8%
5irbA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.80e-01 72.4% 60.6%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 41.0 3.65e-01 78.2% 78.9%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 42.0 3.65e-01 79.3% 56.9%
3lodA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.52e-01 79.3% 83.4%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 43.0 3.74e-01 83.9% 79.7%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.55 33.0 2.81e-01 94.3% 35.2%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 40.0 2.95e-01 79.3% 84.3%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 38.0 3.42e-01 74.7% 82.9%
3wnzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 45.0 3.85e-01 92.0% 89.6%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.54 39.0 3.25e-01 77.0% 82.4%
1wfmA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 39.0 3.38e-01 75.9% 53.6%
5dmxB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 38.0 3.08e-01 72.4% 46.8%
2imhA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 40.0 3.12e-01 81.6% 57.7%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.40e-01 77.0% 78.4%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 45.0 3.50e-01 90.8% 60.2%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 41.0 3.06e-01 83.9% 73.9%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 3.45e-01 94.3% 60.1%
3votB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.02e-01 92.0% 43.0%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.31e-01 90.8% 58.4%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.52 40.0 3.37e-01 83.9% 91.4%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.48e-01 88.5% 82.1%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 37.0 2.77e-01 79.3% 81.9%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 44.0 3.18e-01 95.4% 48.2%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 41.0 3.83e-01 89.7% 95.5%
1gsoA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 42.0 3.59e-01 90.8% 96.4%
2hqyA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 38.0 3.15e-01 82.8% 67.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.80 53.0 5.75e-01 73.6% 80.0%
4170578 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.69 43.0 4.29e-01 80.5% 60.0%
4645074 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.68 41.0 4.40e-01 78.2% 69.3%
4937427 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.68 41.0 4.28e-01 78.2% 65.0%
3739140 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.68 40.0 4.39e-01 78.2% 72.9%
3654720 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.67 51.0 3.28e-01 82.8% 45.6%
4931590 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.67 41.0 4.25e-01 79.3% 66.3%
152904 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.67 41.0 4.11e-01 79.3% 60.9%
5033562 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.66 40.0 4.14e-01 78.2% 65.0%
5036649 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.66 39.0 4.22e-01 78.2% 69.3%
3257459 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 39.0 3.76e-01 78.2% 52.0%
3724523 4121.1.1.7 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.65 51.0 3.40e-01 85.1% 53.3%
3595729 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 41.0 4.25e-01 78.2% 68.8%
4930080 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 40.0 4.13e-01 79.3% 66.3%
5075826 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.65 47.0 3.60e-01 75.9% 70.0%
4934976 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.65 40.0 4.00e-01 79.3% 60.2%
2388639 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.63 39.0 3.79e-01 80.5% 54.5%
3439434 3521.1.1.3 a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › BRX 0.63 32.0 3.94e-01 74.7% 78.2%
3480913 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.62 39.0 4.01e-01 81.6% 64.7%
3972798 210.1.5.1 a+b four layers › Ntn/PP2C › Ntn › SPO2555-like › DUF1028 0.61 44.0 3.37e-01 77.0% 79.1%
3528954 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 44.0 3.79e-01 75.9% 54.3%
3236478 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 43.0 3.67e-01 75.9% 52.3%
3346566 1.1.7.85 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › BRX 0.60 31.0 3.84e-01 75.9% 80.0%
3623113 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.60 39.0 4.00e-01 77.0% 68.2%
3827622 12.2.1.7 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › BRX 0.60 32.0 3.78e-01 77.0% 75.0%
3513020 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.07e-01 77.0% 71.8%
3376285 706.1.1.4 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › BRX 0.59 30.0 3.77e-01 74.7% 81.1%
4935888 206.1.3.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.58 40.0 2.75e-01 72.4% 54.6%
1411389 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.58 41.0 3.00e-01 72.4% 40.6%
3306435 245.3.1.1 a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX 0.58 28.0 3.53e-01 72.4% 75.9%
4981192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 44.0 3.12e-01 80.5% 64.3%
3335040 5.1.3.129 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX 0.57 29.0 3.59e-01 73.6% 76.4%
3689727 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 46.0 2.96e-01 87.4% 47.3%
3249434 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 38.0 3.40e-01 75.9% 48.0%
5007504 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 45.0 3.25e-01 88.5% 93.2%
5002387 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 44.0 3.18e-01 88.5% 93.0%
5008582 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.55 42.0 3.09e-01 83.9% 91.6%
3287308 2008.1.1.20 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.54 40.0 3.21e-01 81.6% 77.0%
3598458 11.1.1.944 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7498 0.54 37.0 3.64e-01 71.3% 65.3%
5050758 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.54 46.0 3.26e-01 90.8% 51.8%
3239028 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.53 45.0 3.36e-01 89.7% 47.8%
5036063 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 44.0 3.48e-01 89.7% 62.8%
3799969 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.53 44.0 3.28e-01 88.5% 48.6%
3997451 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.53 44.0 3.67e-01 88.5% 70.3%
3670778 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 35.0 3.50e-01 87.4% 65.6%
4999001 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.53 45.0 3.11e-01 90.8% 41.8%
3974758 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.53 47.0 3.37e-01 97.7% 58.4%
4411405 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.53 44.0 3.69e-01 89.7% 71.0%
4588934 206.1.3.25 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 0.52 45.0 3.14e-01 95.4% 42.8%
3945901 213.1.1.64 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF535 0.52 41.0 3.03e-01 85.1% 45.8%
4948285 212.1.1.10 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.51 38.0 2.81e-01 80.5% 84.2%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.51 30.0 3.11e-01 71.3% 61.3%
3710219 206.1.3.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.51 44.0 2.91e-01 95.4% 46.0%
5033884 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.50 44.0 3.23e-01 94.3% 51.6%
3774325 210.1.3.4 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.50 37.0 2.82e-01 79.3% 35.9%
3820574 312.1.1.6 a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.50 42.0 3.25e-01 95.4% 47.9%