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NC_049448.1__YP_009882468.1__HYP77_gp36__00036

Bact-Vir

NC_049448.1__YP_009882468.1__HYP77_gp36__00036

Identity

Accession:
NC_049448 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Gegevirus› Klebsiella_phage_ST437-OXA245phi4.1

TaxID: 2510486

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-117
PDB
Domain cluster: rep: IMGVR_UViG_2510065051_000001-2510065051-2510274505__D3-118
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.61 43.0 4.85e-01 98.3% 100.0%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 48.0 4.11e-01 86.2% 90.5%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.60 47.0 4.01e-01 84.5% 90.7%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 42.0 3.18e-01 79.3% 93.5%
3cb6A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.55 43.0 3.33e-01 83.6% 91.0%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.53 41.0 3.48e-01 84.5% 72.2%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.53 45.0 3.06e-01 94.0% 51.9%
5z1aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.65e-01 70.7% 91.5%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 44.0 3.43e-01 93.1% 89.2%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 43.0 3.92e-01 87.9% 83.2%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 4.25e-01 96.6% 97.2%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 40.0 3.72e-01 81.9% 100.0%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.51 41.0 3.25e-01 87.1% 75.2%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 42.0 3.90e-01 88.8% 80.3%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 3.59e-01 86.2% 98.8%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 28.0 3.63e-01 100.0% 97.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997345 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.62 55.0 5.45e-01 100.0% 99.2%
4973410 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 44.0 4.00e-01 81.0% 76.2%
3563069 1086.1.1.5 ↗ beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI 0.58 25.0 3.68e-01 87.1% 100.0%
None — 0.58 40.0 3.00e-01 71.6% 91.5%
3273089 12.3.1.18 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N 0.57 44.0 3.06e-01 81.9% 50.5%
1943 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.56 42.0 3.12e-01 78.4% 90.1%
3182024 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.55 39.0 3.72e-01 73.3% 100.0%
3165874 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.55 43.0 3.39e-01 84.5% 99.2%
4324802 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.56e-01 72.4% 85.5%
3808882 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.54 44.0 3.85e-01 87.9% 76.0%
3941659 11.1.1.10 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_N 0.54 38.0 3.65e-01 72.4% 95.4%
3787225 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.54 39.0 3.32e-01 75.9% 71.3%
5050288 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 44.0 3.29e-01 90.5% 67.7%
4005087 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.53 41.0 3.32e-01 83.6% 68.7%
4668983 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.53 43.0 3.91e-01 87.9% 79.4%
4071803 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 47.0 4.01e-01 99.1% 82.1%
4973777 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 41.0 3.71e-01 81.9% 66.0%
None — 0.52 40.0 2.79e-01 81.9% 96.7%
3944481 5084.1.1.38 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Toluene_X 0.52 38.0 3.48e-01 75.0% 77.0%
None — 0.52 40.0 3.72e-01 81.9% 100.0%
4974879 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 39.0 3.50e-01 81.0% 61.2%
4116729 5084.1.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.51 39.0 3.49e-01 81.9% 92.4%
4823574 4030.1.1.1 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.51 41.0 3.77e-01 87.9% 82.7%
D2 high residues 122-226
PDB
Domain cluster: rep: IMGVR_UViG_2510065051_000001-2510065051-2510274505__D123-220
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.68 42.0 4.83e-01 100.0% 88.9%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.66 44.0 4.65e-01 99.0% 78.9%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 40.0 2.99e-01 72.4% 61.9%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 4.22e-01 75.2% 95.8%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 34.0 3.40e-01 80.0% 57.1%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.88e-01 86.7% 89.4%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.57e-01 72.4% 92.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.53 37.0 3.69e-01 71.4% 84.9%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.81e-01 74.3% 89.5%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 38.0 3.60e-01 81.9% 63.5%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.84e-01 74.3% 91.8%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.88e-01 81.9% 40.8%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.52 46.0 3.92e-01 100.0% 94.9%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.77e-01 74.3% 87.1%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.48e-01 74.3% 73.0%
1kblA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 31.0 3.24e-01 89.5% 65.3%
1x5hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.38e-01 74.3% 65.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 25.0 3.55e-01 83.8% 100.0%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.83e-01 74.3% 96.6%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038450 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.76 69.0 5.07e-01 100.0% 45.9%
4964235 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.74 68.0 5.00e-01 100.0% 40.4%
5052639 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.67 60.0 4.66e-01 100.0% 53.9%
5061415 217.1.1.2 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.62 41.0 3.47e-01 85.7% 40.6%
3726900 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.57 41.0 4.06e-01 74.3% 93.6%
3171616 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.57 41.0 3.83e-01 74.3% 92.3%
3738951 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.57 41.0 4.08e-01 75.2% 92.7%
3952812 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 34.0 3.62e-01 98.1% 67.8%
3220787 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.62e-01 96.2% 94.6%
3702557 3945.1.1.0 ↗ alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain 0.56 45.0 4.22e-01 86.7% 95.4%
3183076 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.55 43.0 2.78e-01 85.7% 93.5%
3192440 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.86e-01 74.3% 90.0%
185207 11.1.1.227 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arylsulfotran_N 0.55 38.0 3.91e-01 73.3% 88.2%
3724765 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.54 42.0 2.72e-01 84.8% 89.5%
3784736 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.54 46.0 3.69e-01 97.1% 96.0%
4003077 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 37.0 3.29e-01 73.3% 58.7%
3364575 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 42.0 3.67e-01 87.6% 86.6%
4024947 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.51e-01 78.1% 64.3%
3881546 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 37.0 3.79e-01 74.3% 85.0%
3619159 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.51 32.0 3.37e-01 97.1% 68.4%
1883531 11.15.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.50 44.0 4.36e-01 95.2% 100.0%
3890320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.73e-01 74.3% 87.4%
5010624 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 38.0 3.27e-01 81.9% 71.3%