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NC_049449.1__YP_009882499.1__HYP78_gp14__00014

Bact-Vir

Identity

Accession:: NC_049449 ↗
Kingdom:: phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Felsduovirus› Klebsiella_phage_ST437-OXA245phi4.2

TaxID: 2510487

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-183

PDB

Domain cluster: representative

CATH (29)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2o3rA02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.70	43.0	5.09e-01	91.7%	87.9%
4g6uA02	3.40.1350.110	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.67	47.0	5.34e-01	96.7%	93.5%
3gpgA00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.65	43.0	4.57e-01	83.9%	74.7%
5f2kB02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.63	38.0	3.61e-01	74.4%	49.5%
2ewfA03	3.40.91.50	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease ›	0.63	55.0	5.04e-01	100.0%	73.3%
5ailA00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.62	44.0	4.44e-01	88.3%	71.7%
3t5tA02	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.61	35.0	3.51e-01	85.0%	52.7%
4bxoA01	3.40.50.10130	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.61	39.0	4.41e-01	94.4%	84.4%
1yd9B00	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.60	45.0	4.48e-01	88.3%	74.3%
3d7nA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.60	44.0	4.70e-01	92.8%	87.3%
1flaA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.60	41.0	4.60e-01	92.2%	90.6%
2q3fA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.59	48.0	4.87e-01	100.0%	86.0%
1eucB03	3.40.50.261	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains	0.59	39.0	4.22e-01	92.8%	80.8%
1rliD00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.58	48.0	4.97e-01	92.8%	93.5%
6feaB01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.57	41.0	4.53e-01	100.0%	91.8%
5ntfA01	3.40.50.10590	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases	0.56	41.0	4.18e-01	89.4%	76.2%
5hvmA02	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.56	37.0	3.51e-01	96.1%	56.2%
1h4xA00	3.30.750.24	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain	0.55	32.0	3.99e-01	89.4%	91.9%
5lqdA02	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.55	36.0	3.47e-01	96.1%	56.5%
3kqxL01	3.40.220.10	Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1	0.54	42.0	4.23e-01	95.6%	78.7%
4r81C00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.54	47.0	4.58e-01	93.3%	92.4%
1di0A00	3.40.50.960	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase	0.54	36.0	3.88e-01	91.7%	79.7%
5vlcA01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.53	31.0	3.33e-01	97.8%	63.9%
1sqsA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.53	44.0	4.04e-01	92.8%	68.4%
3obwA02	3.30.420.60	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2	0.52	30.0	3.59e-01	73.3%	83.1%
5gjnA02	3.20.20.10	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase	0.52	43.0	4.00e-01	87.2%	90.6%
2f9iC00	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.51	43.0	3.63e-01	90.0%	71.0%
1ekeA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.51	36.0	3.77e-01	90.6%	77.8%
7r8iA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.50	39.0	3.68e-01	81.1%	85.7%

ECOD (31)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3976507	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.80	76.0	7.20e-01	100.0%	99.5%
3175080	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.69	42.0	4.68e-01	92.8%	75.7%
3258324	2008.1.1.156 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29906	0.65	46.0	4.82e-01	92.8%	80.6%
3333830	2003.1.5.30 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7	0.60	37.0	4.00e-01	79.4%	70.1%
4946872	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.60	49.0	5.14e-01	97.2%	95.2%
4046444	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.60	49.0	4.94e-01	93.9%	86.1%
4079306	2007.1.13.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DMRL_synthase	0.59	36.0	4.02e-01	92.2%	75.7%
4929325	4126.1.1.5 ↗	a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA_2	0.59	37.0	4.41e-01	88.9%	92.5%
5053332	2004.1.1.16 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf	0.59	48.0	4.83e-01	100.0%	85.0%
5008608	2008.1.1.7 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4	0.58	41.0	4.40e-01	94.4%	84.7%
3179570	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.58	42.0	4.06e-01	95.0%	66.0%
4946335	2004.1.1.19 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras	0.58	47.0	4.60e-01	90.6%	79.5%
5051099	2007.22.1.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Methyl-viologen reducing hydrogenase subunit D › Methyl-viologen reducing hydrogenase subunit D › FlpD	0.58	35.0	3.80e-01	91.7%	71.0%
3456443	2003.1.5.30 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7	0.57	35.0	2.98e-01	70.6%	35.1%
3837933	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.57	52.0	3.58e-01	97.8%	80.2%
4946557	2004.1.1.119 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA	0.57	47.0	4.76e-01	91.7%	87.2%
5024746	7512.1.1.6 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20	0.57	37.0	3.50e-01	99.4%	53.5%
4945971	2004.1.1.19 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras	0.57	47.0	4.67e-01	91.7%	84.3%
3658811	2484.1.1.26 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi	0.55	37.0	4.40e-01	81.7%	98.4%
3335913	2003.1.5.30 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7	0.55	41.0	3.65e-01	76.7%	69.2%
2070988	7512.1.1.6 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20	0.55	36.0	3.37e-01	96.1%	51.1%
3834234	7512.1.1.6 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20	0.54	37.0	3.29e-01	97.2%	47.1%
4383054	7512.1.1.6 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20	0.54	37.0	3.43e-01	97.2%	53.8%
4954622	2007.2.1.3 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red	0.54	46.0	4.67e-01	92.8%	91.6%
4025645	2004.1.1.16 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf	0.53	43.0	4.34e-01	88.9%	86.5%
3685322	2004.1.1.16 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf	0.53	46.0	4.30e-01	100.0%	77.3%
4200900	2007.2.1.3 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red	0.52	42.0	4.32e-01	92.8%	90.6%
3342053	2003.1.5.31 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS	0.52	38.0	2.97e-01	76.1%	37.9%
3823655	2003.1.5.31 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS	0.51	38.0	2.83e-01	76.1%	34.0%
4017507	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.51	42.0	4.33e-01	87.8%	92.0%
3285922	2004.1.1.970 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Barstar	0.50	35.0	3.75e-01	100.0%	81.2%

D2 high residues 186-342

PDB

Domain cluster: rep: ERMGT119_2_scaffold_6_prodigal-single.1__X__X__00305__D55-230

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10592.15 best	AIPR	86.5	3.70e-24	70.1%	37.1%

D3 medium residues 346-434

PDB

Domain cluster: rep: IMGVR_UViG_3300025659_000635-3300025659-Ga0209249_10054883__D355-441

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3hzjA03	1.10.472.80	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3	0.53	41.0	3.57e-01	98.9%	51.7%
4oa3A00	3.10.310.50	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.50	44.0	3.86e-01	100.0%	80.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4937900	2006.1.4.50 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368	0.57	43.0	3.60e-01	82.0%	85.0%

D4 medium residues 435-580

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3a06B03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.64	38.0	4.66e-01	80.8%	95.5%
1gakA00	1.20.150.10	Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein	0.58	42.0	4.41e-01	75.3%	82.5%
3i2fA02	1.10.3020.10	Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain)	0.57	33.0	4.02e-01	97.9%	87.4%
2ly8A00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.56	35.0	3.80e-01	93.8%	73.6%
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.56	26.0	3.10e-01	98.6%	61.8%
3nkeA00	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.55	44.0	4.13e-01	85.6%	71.0%
3i5pA03	1.20.120.1880	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain	0.54	29.0	2.43e-01	96.6%	29.9%
1ulyA02	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.53	36.0	4.28e-01	87.0%	100.0%
4kk2B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.50	44.0	3.40e-01	96.6%	97.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3666426	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.63	40.0	4.80e-01	93.8%	96.8%
3732214	3327.1.1.1 ↗	alpha bundles › HET-S N-terminal domain › HET-S N-terminal domain › HET-S N-terminal domain › HeLo	0.51	37.0	3.46e-01	75.3%	92.6%