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NC_049459.1__YP_009883318.1__HYP89_gp30__00030

Bact-Vir

NC_049459.1__YP_009883318.1__HYP89_gp30__00030

Identity

Accession:
NC_049459 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Eganvirus› Salmonella_phage_SW9

TaxID: 2592223

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-109
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10709.15 best DUF2511 62.0 7.80e-17 97.7% 90.8%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.71 28.0 4.11e-01 70.1% 82.1%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 40.0 4.34e-01 100.0% 68.5%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 30.0 3.71e-01 95.4% 66.7%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 26.0 3.62e-01 71.3% 100.0%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 35.0 4.19e-01 78.2% 89.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 30.0 3.98e-01 93.1% 93.5%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 33.0 3.91e-01 96.6% 90.4%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 33.0 3.81e-01 93.1% 77.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 31.0 3.78e-01 96.6% 88.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.90e-01 96.6% 96.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 31.0 3.91e-01 94.3% 100.0%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 48.0 3.91e-01 100.0% 87.1%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 34.0 4.04e-01 87.4% 98.2%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.50e-01 96.6% 90.2%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 45.0 3.85e-01 96.6% 99.3%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 3.03e-01 86.2% 45.7%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.51 28.0 3.17e-01 78.2% 73.8%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.85e-01 94.3% 98.4%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 43.0 3.60e-01 100.0% 92.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2833343 3982.1.1.1 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.94 91.0 8.76e-01 100.0% 92.6%
3280837 3982.1.1.1 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.93 80.0 7.92e-01 100.0% 86.7%
1673883 3982.1.1.1 ↗ a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › DUF2511 0.90 77.0 7.13e-01 100.0% 74.3%
4931925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.58e-01 90.8% 67.6%
2426645 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.61 34.0 4.14e-01 86.2% 87.3%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 32.0 3.73e-01 93.1% 78.3%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 33.0 3.95e-01 96.6% 90.9%
3362766 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 29.0 3.63e-01 70.1% 86.0%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 29.0 3.54e-01 96.6% 83.6%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 32.0 3.79e-01 93.1% 94.5%
3215728 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 30.0 3.40e-01 74.7% 78.3%
3886813 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.51 37.0 3.77e-01 80.5% 78.8%
3761968 233.1.1.5 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_2 0.51 42.0 3.54e-01 100.0% 86.9%
5079725 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 32.0 3.72e-01 71.3% 93.3%
3226690 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.50 43.0 3.72e-01 96.6% 90.7%
3301044 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.50 40.0 3.04e-01 85.1% 88.8%