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NC_049463.1__YP_009883686.1__HYP93_gp76__00058

Bact-Vir

NC_049463.1__YP_009883686.1__HYP93_gp76__00058

Identity

Accession:
NC_049463 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Pokkenvirus› Stenotrophomonas_phage_Pokken

TaxID: 2596674

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 161-235_250-362
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.67 22.0 4.10e-01 70.2% 96.7%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 53.0 4.26e-01 84.0% 83.7%
1x1iA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 53.0 4.62e-01 84.0% 97.4%
1f1sA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 52.0 4.53e-01 83.0% 98.9%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 49.0 4.21e-01 77.7% 97.5%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 48.0 4.23e-01 77.1% 98.5%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.63 30.0 3.08e-01 78.2% 46.9%
1k1yB02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 51.0 4.55e-01 84.0% 99.2%
6f91A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 51.0 4.44e-01 87.2% 92.4%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.60 48.0 4.05e-01 84.0% 95.5%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 48.0 4.09e-01 87.8% 95.7%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.56 47.0 3.94e-01 87.8% 95.8%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.56 31.0 3.91e-01 97.9% 89.4%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 51.0 4.36e-01 100.0% 100.0%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 30.0 3.49e-01 81.9% 75.9%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 29.0 3.62e-01 76.6% 89.6%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 32.0 3.58e-01 96.3% 78.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880457 12.3.1.22 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N 0.65 49.0 4.30e-01 77.1% 95.9%
5010773 12.3.1.74 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.65 50.0 4.70e-01 79.8% 99.6%
3987265 12.3.1.29 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_3 0.64 49.0 4.20e-01 78.7% 93.0%
3218632 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.60 28.0 3.88e-01 87.2% 87.2%
3635973 12.3.1.9 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 0.59 48.0 3.93e-01 86.2% 62.9%
3250134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 31.0 3.88e-01 100.0% 85.0%
4466055 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.56 47.0 3.91e-01 87.8% 89.5%
5065294 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.54 32.0 3.41e-01 75.5% 64.1%
5035188 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.53 29.0 3.64e-01 77.7% 83.9%
4993408 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.52 32.0 3.47e-01 100.0% 71.2%
4229994 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 27.0 3.53e-01 96.3% 94.0%
D2 medium residues 73-152
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.44e-01 71.2% 65.6%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 45.0 3.23e-01 98.8% 58.8%
1nrkA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.51 36.0 3.51e-01 73.8% 78.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 35.0 3.46e-01 73.8% 79.8%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 33.0 3.32e-01 71.2% 64.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 40.0 3.38e-01 73.8% 94.8%
2579126 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.53 38.0 3.14e-01 75.0% 70.8%
3350913 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 38.0 3.04e-01 80.0% 91.2%
3908016 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.52 33.0 3.47e-01 70.0% 70.7%
3447240 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.51 36.0 2.95e-01 73.8% 99.4%