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NC_049467.1__YP_009884195.1__HYP97_gp34__00055

Bact-Vir

NC_049467.1__YP_009884195.1__HYP97_gp34__00055

Identity

Accession:
NC_049467 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Pylasvirus› Klebsiella_phage_KpCHEMY26

TaxID: 2596966

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-107
PDB
Domain cluster: rep: JN585957.1__AEY69651.1__PEp14_00062__00062__D112-188
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 4.84e-01 100.0% 68.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 53.0 5.73e-01 100.0% 97.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 4.89e-01 100.0% 70.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.99e-01 97.5% 90.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 48.0 5.22e-01 97.5% 95.3%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 53.0 5.42e-01 100.0% 92.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 39.0 4.11e-01 91.3% 74.6%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.60 39.0 4.04e-01 98.8% 72.6%
1oqkA00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.60 39.0 3.95e-01 100.0% 67.9%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 30.0 3.17e-01 82.5% 54.2%
1mpyA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 34.0 2.75e-01 77.5% 31.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.28e-01 100.0% 90.1%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 2.88e-01 92.5% 48.5%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 40.0 4.05e-01 97.5% 80.5%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 41.0 3.56e-01 87.5% 90.5%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 3.25e-01 91.3% 48.7%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.52 37.0 3.08e-01 100.0% 41.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 52.0 6.21e-01 100.0% 96.4%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 48.0 5.53e-01 97.5% 91.4%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 5.57e-01 100.0% 82.7%
3982999 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.71 58.0 5.38e-01 100.0% 70.0%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 52.0 4.99e-01 97.5% 67.8%
157526 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 52.0 5.75e-01 100.0% 100.0%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 51.0 5.29e-01 98.8% 82.7%
3867384 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.69 55.0 5.56e-01 100.0% 85.0%
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.39e-01 100.0% 92.3%
3448216 4.1.1.421 ↗ beta barrels › SH3 › SH3 › SH3 › ARF_AD 0.66 51.0 5.40e-01 100.0% 92.9%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.64 43.0 4.70e-01 100.0% 86.2%
3480200 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 51.0 5.30e-01 97.5% 100.0%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.57 37.0 3.98e-01 100.0% 81.5%
3649710 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 46.0 2.74e-01 92.5% 43.1%
5710 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 32.0 3.32e-01 77.5% 61.0%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.55 38.0 4.07e-01 100.0% 90.8%
3468906 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 36.0 3.56e-01 82.5% 64.7%
3658595 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.54 36.0 3.80e-01 81.2% 78.6%
3479961 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.53 44.0 2.76e-01 92.5% 51.5%
None — 0.53 44.0 2.89e-01 92.5% 67.5%
3927949 2008.1.1.29 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.53 46.0 3.36e-01 100.0% 45.1%
3933131 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 47.0 4.06e-01 100.0% 65.0%
3700637 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.52 44.0 2.84e-01 92.5% 66.2%
3208838 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.52 47.0 3.79e-01 100.0% 55.5%
3702718 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.52 43.0 3.19e-01 92.5% 91.3%
3706730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.50e-01 95.0% 95.0%
4141744 2003.1.2.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase 0.51 42.0 2.56e-01 92.5% 33.2%
3632437 76.1.1.7 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.50 40.0 3.27e-01 92.5% 97.7%
4031519 3425.1.1.1 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH N-terminal domain › YycH N-terminal domain › YycH 0.50 42.0 3.55e-01 96.2% 73.8%