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NC_049470.1__YP_009884480.1__HYQ00_gp77__00077

Bact-Vir

NC_049470.1__YP_009884480.1__HYQ00_gp77__00077

Identity

Accession:
NC_049470 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triplejayvirus› Arthrobacter_phage_TripleJ

TaxID: 2599838

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.65 38.0 4.21e-01 79.2% 75.0%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 3.01e-01 88.7% 20.6%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 49.0 4.40e-01 100.0% 75.9%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 45.0 3.51e-01 88.7% 81.9%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.58 46.0 3.40e-01 90.6% 41.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 41.0 3.80e-01 90.6% 59.4%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 46.0 3.24e-01 98.1% 74.9%
3ef6A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 3.02e-01 77.4% 65.0%
3a07B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 41.0 3.31e-01 88.7% 45.8%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 43.0 2.90e-01 98.1% 41.5%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.81e-01 79.2% 73.2%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 38.0 3.98e-01 88.7% 85.7%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 41.0 3.76e-01 90.6% 70.7%
3kljA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.55e-01 77.4% 50.8%
1kqfB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 38.0 3.31e-01 84.9% 100.0%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 38.0 3.13e-01 92.5% 94.4%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 36.0 2.89e-01 77.4% 71.8%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 36.0 2.92e-01 77.4% 68.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926962 3964.1.1.1 ↗ beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.71 56.0 4.92e-01 86.8% 83.7%
3836621 66.1.1.2 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.67 57.0 4.29e-01 100.0% 52.9%
4187442 375.1.1.76 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 0.67 41.0 4.65e-01 71.7% 88.6%
3822617 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.66 52.0 4.61e-01 84.9% 60.0%
4159320 3111.1.1.2 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3_PglB_C 0.66 47.0 4.08e-01 88.7% 48.2%
3220397 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.65 51.0 4.73e-01 88.7% 69.2%
119319 3111.1.1.2 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3_PglB_C 0.64 45.0 3.91e-01 86.8% 45.9%
3231261 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 38.0 2.50e-01 71.7% 14.1%
3589071 9.1.1.32 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4828 0.58 49.0 4.48e-01 100.0% 96.0%
4929392 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 41.0 3.52e-01 77.4% 55.6%
3957884 4294.1.1.5 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › DUF3179 0.57 49.0 3.92e-01 100.0% 85.5%
3229415 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 39.0 3.57e-01 73.6% 73.3%
4023327 9.2.1.3 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.56 40.0 2.92e-01 86.8% 82.5%
4355726 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.54 45.0 3.29e-01 98.1% 52.1%
3786106 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.54 44.0 3.71e-01 100.0% 73.3%
3772302 3006.1.1.2 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Gemin6_C 0.54 47.0 4.30e-01 100.0% 82.9%
3317146 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.53 42.0 3.33e-01 94.3% 72.6%
3278865 142.3.1.0 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.52 36.0 3.46e-01 100.0% 61.5%
3440476 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.52 41.0 3.29e-01 94.3% 75.6%