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NC_049471.1__YP_009884526.1__HYQ01_gp041__00041
Bact-VirNC_049471.1__YP_009884526.1__HYQ01_gp041__00041
Identity
- Accession:
- NC_049471 ↗
- Kingdom:
- phage
Quality
76.5
mean pLDDT
Taxonomy
TaxID: 2599828
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-78
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.85 | 77.0 | 5.73e-01 | 100.0% | 54.9% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.80 | 70.0 | 5.03e-01 | 96.4% | 72.0% |
| 2wl8C00 | 1.20.120.900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain | 0.78 | 67.0 | 5.35e-01 | 96.4% | 50.5% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.76 | 64.0 | 4.48e-01 | 92.9% | 30.7% |
| 1z5zA02 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.76 | 54.0 | 4.94e-01 | 76.8% | 56.6% |
| 4agsA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.75 | 62.0 | 4.67e-01 | 92.9% | 38.5% |
| 3dwcA00 | 1.10.1370.30 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › | 0.74 | 60.0 | 3.50e-01 | 91.1% | 10.2% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.74 | 62.0 | 4.31e-01 | 94.6% | 29.4% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 61.0 | 4.01e-01 | 92.9% | 22.8% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.73 | 55.0 | 4.36e-01 | 91.1% | 40.2% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 54.0 | 5.60e-01 | 82.1% | 96.1% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 59.0 | 3.90e-01 | 91.1% | 21.6% |
| 3rlfF01 | 1.20.58.370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like | 0.72 | 56.0 | 4.94e-01 | 87.5% | 57.0% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.72 | 55.0 | 5.16e-01 | 85.7% | 69.0% |
| 2wzkA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.71 | 56.0 | 4.38e-01 | 92.9% | 39.4% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.70 | 57.0 | 4.19e-01 | 91.1% | 46.2% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 56.0 | 5.41e-01 | 91.1% | 81.2% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.68 | 54.0 | 4.83e-01 | 89.3% | 64.6% |
| 1chuA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.68 | 52.0 | 4.54e-01 | 85.7% | 54.5% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.68 | 57.0 | 4.16e-01 | 91.1% | 40.0% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.68 | 56.0 | 4.79e-01 | 92.9% | 70.3% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 50.0 | 5.06e-01 | 87.5% | 82.1% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.68 | 49.0 | 4.44e-01 | 83.9% | 55.6% |
| 1gwcA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 60.0 | 4.48e-01 | 100.0% | 44.0% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 52.0 | 5.23e-01 | 87.5% | 87.9% |
| 3rpmA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.66 | 50.0 | 4.40e-01 | 82.1% | 56.5% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.66 | 55.0 | 4.19e-01 | 92.9% | 70.0% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.66 | 50.0 | 5.24e-01 | 87.5% | 97.9% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.65 | 51.0 | 4.39e-01 | 85.7% | 53.3% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.65 | 51.0 | 3.99e-01 | 87.5% | 78.1% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.65 | 47.0 | 4.51e-01 | 83.9% | 65.7% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.65 | 53.0 | 4.13e-01 | 100.0% | 52.5% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 51.0 | 4.66e-01 | 91.1% | 78.5% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.64 | 51.0 | 4.47e-01 | 89.3% | 57.6% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 47.0 | 5.03e-01 | 82.1% | 93.8% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 50.0 | 3.68e-01 | 85.7% | 87.0% |
| 3qwwA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 54.0 | 3.79e-01 | 100.0% | 34.0% |
| 2vs0A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 50.0 | 4.49e-01 | 89.3% | 61.0% |
| 4hb1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 44.0 | 4.73e-01 | 78.6% | 97.7% |
| 4azcA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.63 | 45.0 | 4.45e-01 | 82.1% | 72.9% |
| 5mmjb02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 45.0 | 4.68e-01 | 87.5% | 80.8% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.63 | 53.0 | 3.79e-01 | 96.4% | 71.2% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 49.0 | 4.17e-01 | 92.9% | 51.4% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 51.0 | 4.24e-01 | 94.6% | 51.9% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 50.0 | 4.84e-01 | 94.6% | 90.9% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 48.0 | 2.96e-01 | 91.1% | 14.1% |
| 1m56C01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 42.0 | 4.09e-01 | 98.2% | 72.5% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3569033 | 3538.1.1.8 ↗ | extended segments › MerF › MerF › MerF › PF28754 | 0.86 | 65.0 | 6.58e-01 | 87.5% | 81.8% |
| 3389507 | 3817.1.1.1 ↗ | alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 | 0.82 | 73.0 | 5.65e-01 | 98.2% | 46.7% |
| 3974197 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 68.0 | 6.04e-01 | 94.6% | 86.3% |
| 4939305 | 7577.1.1.13 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › SepSecS | 0.75 | 58.0 | 3.49e-01 | 89.3% | 12.5% |
| 3731062 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.75 | 66.0 | 5.74e-01 | 98.2% | 68.2% |
| 4987225 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.74 | 64.0 | 3.93e-01 | 100.0% | 28.3% |
| 4929363 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.74 | 59.0 | 4.71e-01 | 89.3% | 47.0% |
| 3503594 | 192.8.1.391 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › EMC3_TMCO1 | 0.74 | 61.0 | 5.27e-01 | 94.6% | 60.0% |
| 5080404 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.73 | 54.0 | 3.91e-01 | 80.4% | 29.4% |
| 3271160 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.73 | 61.0 | 4.07e-01 | 92.9% | 24.5% |
| 4988222 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.73 | 60.0 | 5.35e-01 | 98.2% | 65.0% |
| 3199608 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 59.0 | 4.73e-01 | 89.3% | 66.4% |
| 4489485 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.72 | 58.0 | 3.97e-01 | 89.3% | 35.9% |
| 4890998 | 148.1.3.28 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_11 | 0.71 | 56.0 | 3.50e-01 | 91.1% | 16.1% |
| 197440 | 5055.1.1.2 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › DIP0205-like_N | 0.71 | 55.0 | 5.15e-01 | 87.5% | 69.4% |
| 3234270 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.70 | 52.0 | 4.63e-01 | 85.7% | 54.1% |
| 4361 | 605.7.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › FHV B2 protein-like › FHV B2 protein-like › B2 | 0.69 | 54.0 | 5.13e-01 | 89.3% | 75.7% |
| 3733553 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.69 | 55.0 | 3.35e-01 | 89.3% | 14.2% |
| 5052725 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.69 | 54.0 | 5.08e-01 | 89.3% | 74.3% |
| 3780051 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.69 | 57.0 | 5.64e-01 | 94.6% | 90.0% |
| 3263072 | 109.4.1.427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SDA1_HEAT | 0.68 | 62.0 | 3.49e-01 | 100.0% | 9.5% |
| 3994851 | 601.1.2.63 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › HIP1R | 0.68 | 57.0 | 4.33e-01 | 100.0% | 74.7% |
| 3702706 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.68 | 56.0 | 5.01e-01 | 91.1% | 98.8% |
| 3401938 | 3602.1.1.14 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 | 0.68 | 54.0 | 4.95e-01 | 92.9% | 65.3% |
| 3058203 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.68 | 60.0 | 4.45e-01 | 100.0% | 47.9% |
| 3507551 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.67 | 53.0 | 4.50e-01 | 87.5% | 70.5% |
| 4950296 | 4333.1.1.2 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C | 0.66 | 56.0 | 3.63e-01 | 100.0% | 88.1% |
| 4228852 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.66 | 50.0 | 3.49e-01 | 89.3% | 24.1% |
| 3370743 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.65 | 51.0 | 4.68e-01 | 91.1% | 65.0% |
| 5003516 | 7577.1.1.3 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 | 0.65 | 47.0 | 2.89e-01 | 80.4% | 11.7% |
| 3849769 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.65 | 54.0 | 4.07e-01 | 91.1% | 40.7% |
| 3478131 | 109.4.1.267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CIP2A_N | 0.64 | 54.0 | 3.00e-01 | 92.9% | 6.8% |
| 1506772 | 3812.1.1.1 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E | 0.64 | 50.0 | 4.70e-01 | 89.3% | 71.4% |
| 2720300 | 192.22.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 › RLIP76_Ral-bd | 0.64 | 49.0 | 5.09e-01 | 83.9% | 92.2% |
| 3699463 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.64 | 52.0 | 3.52e-01 | 91.1% | 24.2% |
| 3471396 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.63 | 52.0 | 4.33e-01 | 89.3% | 53.7% |
| 4089654 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.63 | 46.0 | 3.75e-01 | 78.6% | 95.2% |