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NC_049473.1__YP_009884810.1__HYQ03_gp02__00002

Bact-Vir

NC_049473.1__YP_009884810.1__HYQ03_gp02__00002

Identity

Accession:
NC_049473 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kuleanavirus› Arthrobacter_phage_Kuleana

TaxID: 2653270

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23931.2 best Terminase_6 27.4 5.40e-06 94.4% 68.8%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.72 57.0 5.63e-01 98.6% 81.3%
3kdrA01 1.20.1270.210 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.68 59.0 5.12e-01 94.4% 86.8%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.68 58.0 4.50e-01 94.4% 69.5%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.67 52.0 4.88e-01 97.2% 67.8%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.66 57.0 4.51e-01 97.2% 61.5%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 56.0 4.82e-01 98.6% 83.1%
1gqeA01 1.20.58.410 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor 0.65 57.0 4.93e-01 100.0% 94.7%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.64 53.0 5.13e-01 95.8% 89.0%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.64 49.0 4.12e-01 83.1% 49.6%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 57.0 4.84e-01 100.0% 61.9%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.61 44.0 4.51e-01 83.1% 79.1%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 47.0 3.95e-01 81.7% 50.0%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.61 52.0 3.85e-01 98.6% 77.3%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.60 53.0 4.76e-01 98.6% 93.0%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.60 49.0 4.63e-01 90.1% 76.5%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.58 48.0 4.69e-01 97.2% 84.1%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 40.0 4.33e-01 77.5% 94.6%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 46.0 4.43e-01 91.5% 89.0%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.57 48.0 4.39e-01 100.0% 71.4%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.56 47.0 4.15e-01 98.6% 63.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 43.0 4.02e-01 97.2% 75.0%
4b9kE00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.51 42.0 4.04e-01 94.4% 77.9%
1qguB04 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.51 34.0 3.29e-01 77.5% 59.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3801692 604.12.1.5 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SUV3_C 0.71 49.0 4.42e-01 74.6% 53.7%
3503962 4967.1.1.29 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › DUF7047 0.69 56.0 5.39e-01 100.0% 77.5%
3737685 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.67 58.0 5.28e-01 95.8% 84.2%
3738845 5071.1.1.1 ↗ alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge 0.64 46.0 4.60e-01 85.9% 73.0%
4988178 633.29.1.0 ↗ alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 0.64 56.0 5.11e-01 98.6% 89.5%
3692560 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.63 54.0 4.41e-01 100.0% 52.4%
3512236 219.1.1.48 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C65 0.62 54.0 4.22e-01 100.0% 66.3%
3588708 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.62 47.0 4.26e-01 83.1% 60.0%
2538989 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.61 47.0 4.10e-01 85.9% 57.4%
4169057 4952.1.1.0 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.61 51.0 4.63e-01 93.0% 75.8%
3684818 4952.1.1.1 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 0.60 50.0 4.33e-01 94.4% 64.3%
3389507 3817.1.1.1 ↗ alpha bundles › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Peroxisomal biogenesis factor 19 › Pex19 0.60 52.0 4.45e-01 100.0% 79.2%
4967463 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.60 49.0 4.21e-01 100.0% 55.2%
3602527 101.1.1.131 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Arch_fla_DE 0.57 46.0 4.26e-01 87.3% 100.0%
4976369 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 47.0 4.12e-01 100.0% 65.2%
4164998 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.53 42.0 3.80e-01 87.3% 66.0%
3190824 166.1.1.0 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.53 45.0 4.45e-01 100.0% 92.0%
2723814 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.52 37.0 3.57e-01 76.1% 74.4%
4997360 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 48.0 3.27e-01 98.6% 36.1%
4017306 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.51 44.0 4.27e-01 100.0% 87.5%