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NC_049478.1__YP_009885120.1__HYQ08_gp040__00040

Bact-Vir

NC_049478.1__YP_009885120.1__HYQ08_gp040__00040

Identity

Accession:
NC_049478 ↗
Kingdom:
phage

Quality

78.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-61
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.86 77.0 5.63e-01 100.0% 38.9%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.81 71.0 5.20e-01 100.0% 37.7%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.79 69.0 5.17e-01 100.0% 40.5%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.78 68.0 6.16e-01 100.0% 71.6%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.78 68.0 5.20e-01 100.0% 43.4%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 64.0 4.92e-01 100.0% 39.7%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.21e-01 77.6% 69.0%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.85e-01 77.6% 50.0%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.04e-01 81.6% 63.0%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.91e-01 89.8% 51.9%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.60 49.0 3.90e-01 95.9% 84.3%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.60 45.0 3.66e-01 83.7% 49.0%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.46e-01 77.6% 40.8%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.69e-01 75.5% 50.7%
2vqmA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.58 42.0 2.50e-01 75.5% 83.6%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.69e-01 83.7% 51.2%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.85e-01 83.7% 61.9%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.77e-01 95.9% 48.5%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.78e-01 89.8% 55.1%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.87e-01 87.8% 68.1%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.73e-01 89.8% 53.9%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.37e-01 95.9% 58.0%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.11e-01 89.8% 29.5%
1rkbA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 40.0 2.88e-01 83.7% 36.4%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.09e-01 95.9% 30.4%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 38.0 2.43e-01 75.5% 42.5%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.54 39.0 3.35e-01 95.9% 45.1%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.77e-01 95.9% 64.7%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 31.0 2.65e-01 100.0% 30.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.37e-01 89.8% 48.4%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.64e-01 100.0% 58.1%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 41.0 3.67e-01 95.9% 64.6%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 38.0 2.35e-01 87.8% 15.0%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 38.0 3.21e-01 85.7% 61.2%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 38.0 2.30e-01 87.8% 15.0%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.54e-01 89.8% 66.1%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 2.99e-01 95.9% 32.5%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 41.0 2.72e-01 100.0% 37.4%
2yxlA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.50 41.0 3.94e-01 93.9% 87.9%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387406 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.86 75.0 5.80e-01 100.0% 45.7%
3387245 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.86 76.0 5.47e-01 100.0% 36.3%
4933113 101.1.9.150 alpha arrays › HTH › HTH › Putative DNA-binding domain › Cas12f1-like_TNB 0.83 59.0 4.56e-01 91.8% 34.5%
3282088 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.82 72.0 5.79e-01 100.0% 55.8%
5007668 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 70.0 5.24e-01 100.0% 38.4%
3589820 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 72.0 5.34e-01 100.0% 39.2%
4470278 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.81 71.0 5.38e-01 100.0% 42.6%
5047649 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.81 69.0 6.86e-01 95.9% 94.0%
4933561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 67.0 6.53e-01 95.9% 83.6%
4375315 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 65.0 6.51e-01 95.9% 90.0%
3281873 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.81 71.0 4.52e-01 100.0% 21.3%
3960483 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 67.0 6.69e-01 98.0% 92.0%
4266122 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 69.0 5.57e-01 100.0% 50.5%
5082561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 65.0 6.54e-01 93.9% 90.0%
1844183 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 70.0 5.11e-01 100.0% 37.1%
4031764 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 69.0 5.01e-01 100.0% 35.5%
4668740 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 71.0 5.49e-01 100.0% 46.7%
3972191 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.79 68.0 4.92e-01 100.0% 34.3%
3284986 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.79 68.0 5.11e-01 100.0% 40.0%
5064906 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.79 67.0 6.53e-01 100.0% 87.3%
3286164 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.79 69.0 4.43e-01 100.0% 21.3%
4950846 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 65.0 6.52e-01 98.0% 94.0%
3975516 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.78 67.0 5.24e-01 100.0% 45.7%
3284779 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 66.0 4.96e-01 100.0% 38.4%
3278826 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.78 66.0 4.99e-01 100.0% 40.0%
3279459 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.77 66.0 4.94e-01 100.0% 39.0%
3280706 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 66.0 5.68e-01 100.0% 60.0%
3952885 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 66.0 6.62e-01 98.0% 96.0%
3290830 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 65.0 5.00e-01 100.0% 41.7%
360918 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 66.0 5.05e-01 100.0% 41.9%
3278868 101.1.9.84 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.76 58.0 4.86e-01 85.7% 48.2%
4284807 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 65.0 4.74e-01 100.0% 35.0%
5070666 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 65.0 6.31e-01 100.0% 89.1%
3284505 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.76 65.0 5.02e-01 100.0% 42.6%
3282549 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 58.0 4.45e-01 87.8% 36.5%
3589130 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.75 65.0 6.28e-01 98.0% 87.3%
4994568 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.75 63.0 6.12e-01 100.0% 87.3%
4090636 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 64.0 5.72e-01 100.0% 68.6%
2168161 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.74 62.0 6.02e-01 98.0% 84.2%
3289439 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 61.0 5.97e-01 100.0% 87.3%
4932995 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 58.0 5.84e-01 100.0% 94.0%
3959786 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 49.0 4.11e-01 75.5% 41.1%
4954942 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 52.0 4.96e-01 100.0% 80.0%
5003127 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.61 44.0 3.67e-01 83.7% 43.3%
139679 101.1.9.21 alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.60 49.0 3.90e-01 95.9% 84.3%
3603679 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.55 46.0 3.50e-01 95.9% 66.7%
9289 2003.1.2.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.55 41.0 2.93e-01 89.8% 57.8%
4976557 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.55 44.0 3.15e-01 95.9% 46.4%
4000471 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.54 45.0 3.23e-01 98.0% 72.7%
3988605 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 4.00e-01 100.0% 80.0%
3885052 145.1.1.4 alpha arrays › F-box domain › F-box domain › F-box domain › ASXH 0.54 41.0 3.52e-01 93.9% 50.5%
4962131 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.53 41.0 3.42e-01 89.8% 48.4%
3589863 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.53 43.0 3.66e-01 95.9% 63.3%
5024301 101.1.2.404 alpha arrays › HTH › HTH › winged helix domain › DUF505 0.53 44.0 3.70e-01 93.9% 69.4%
5077394 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 40.0 3.22e-01 87.8% 41.7%
3320650 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 38.0 3.20e-01 81.6% 44.0%
3186208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.15e-01 73.5% 50.8%
4232456 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.53 42.0 3.47e-01 98.0% 46.7%
4948782 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.53 39.0 3.59e-01 89.8% 58.7%
5023102 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 42.0 3.34e-01 93.9% 55.5%
5005057 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.52 43.0 3.43e-01 100.0% 68.7%
5051539 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 39.0 3.16e-01 89.8% 40.9%
4975047 2003.1.2.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.52 37.0 2.54e-01 87.8% 42.6%
3969986 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 40.0 2.74e-01 98.0% 99.6%
4929638 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.52 44.0 3.92e-01 95.9% 72.9%
4986171 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.52 42.0 3.59e-01 100.0% 78.9%
3824428 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.51 41.0 3.18e-01 98.0% 37.7%
4928633 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.51 42.0 3.35e-01 93.9% 59.0%
None 0.50 40.0 2.67e-01 100.0% 72.8%
5074774 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.49e-01 98.0% 78.9%
5028744 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.50 39.0 3.44e-01 100.0% 58.9%