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NC_049485.1__YP_009885748.1__HYQ15_gp50__00050

Bact-Vir

NC_049485.1__YP_009885748.1__HYQ15_gp50__00050

Identity

Accession:
NC_049485 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Skunavirus› Lactococcus_phage_CHPC958

TaxID: 2675254

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-64
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.67 48.0 4.36e-01 78.3% 87.1%
3lufB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 50.0 4.09e-01 86.7% 65.0%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.63 50.0 4.20e-01 93.3% 97.4%
1zd0A01 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.62 46.0 3.66e-01 81.7% 86.9%
2kswA01 3.30.1490.260 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 43.0 4.73e-01 86.7% 95.7%
5aykA04 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 45.0 3.85e-01 86.7% 92.2%
1vw4G00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.57 42.0 4.34e-01 95.0% 85.5%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.57 34.0 3.83e-01 73.3% 97.1%
4i62A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 45.0 3.90e-01 88.3% 55.9%
5l9iB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 40.0 3.08e-01 76.7% 85.2%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.56 43.0 3.55e-01 86.7% 76.3%
3u02A01 3.30.70.2200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 3.63e-01 100.0% 72.2%
1utbB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 39.0 3.44e-01 81.7% 56.6%
2aj0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.68e-01 81.7% 91.5%
6jmtB01 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.50 38.0 3.24e-01 98.3% 48.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992153 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.87 70.0 6.58e-01 100.0% 72.9%
4981661 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.68 58.0 5.25e-01 98.3% 97.6%
5035014 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.68 51.0 4.93e-01 83.3% 91.4%
4050535 304.126.1.2 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V-ATPase_C 0.64 47.0 3.75e-01 80.0% 55.4%
4818712 4187.1.1.2 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.59 44.0 4.47e-01 100.0% 86.2%
3575538 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 50.0 4.07e-01 95.0% 80.0%
5000640 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 46.0 4.55e-01 91.7% 100.0%
5025013 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.56 40.0 4.18e-01 76.7% 98.2%