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NC_049489.1__YP_009885949.1__HYQ19_gp027__00027
Bact-VirNC_049489.1__YP_009885949.1__HYQ19_gp027__00027
Identity
- Accession:
- NC_049489 ↗
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Taxonomy
TaxID: 2686080
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 671-769
Domain cluster:
rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gudA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 64.0 | 5.96e-01 | 88.9% | 96.6% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 64.0 | 5.44e-01 | 97.0% | 87.6% |
| 3bexA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 33.0 | 3.22e-01 | 93.9% | 55.4% |
| 1vsgA02 | 1.10.470.10 | Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 | 0.52 | 39.0 | 3.40e-01 | 81.8% | 87.4% |
| 4yisB02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 39.0 | 3.60e-01 | 82.8% | 62.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033696 | 3240.1.1.0 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein | 0.77 | 70.0 | 6.53e-01 | 98.0% | 92.5% |
| 3225281 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.77 | 70.0 | 5.96e-01 | 100.0% | 64.0% |
| 382463 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.75 | 63.0 | 5.87e-01 | 88.9% | 95.0% |
| 3563383 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.72 | 66.0 | 5.65e-01 | 100.0% | 67.7% |
| 3273707 | 3240.1.1.2 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74,MYRF_ICA | 0.72 | 58.0 | 5.36e-01 | 85.9% | 75.2% |
| 3275547 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.70 | 54.0 | 5.20e-01 | 80.8% | 84.5% |
| 1509442 | 3240.1.1.1 ↗ | alpha arrays › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Intramolecular chaperone domain in virus tail spike protein › Peptidase_S74 | 0.70 | 63.0 | 5.48e-01 | 100.0% | 96.0% |
| 3727612 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 39.0 | 3.22e-01 | 96.0% | 32.2% |
| 3217396 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.53 | 44.0 | 3.08e-01 | 92.9% | 76.3% |
| 3469845 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.53 | 45.0 | 3.79e-01 | 97.0% | 81.1% |
| 3269558 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.53 | 45.0 | 3.04e-01 | 92.9% | 54.8% |
| 3228630 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.52 | 44.0 | 3.04e-01 | 92.9% | 82.1% |
| 3167112 | 109.50.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A › PRP38 | 0.51 | 30.0 | 2.36e-01 | 91.9% | 26.7% |
D2
medium
residues 530-637
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.53 | 44.0 | 3.95e-01 | 93.5% | 93.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3597793 | 5094.1.1.0 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like | 0.60 | 35.0 | 3.31e-01 | 90.7% | 45.9% |
| 3677933 | 109.4.1.1989 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd | 0.51 | 44.0 | 2.88e-01 | 99.1% | 71.9% |