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NC_049491.1__YP_009886401.1__HYQ21_gp124__00124

Bact-Vir

NC_049491.1__YP_009886401.1__HYQ21_gp124__00124

Identity

Accession:
NC_049491 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Lazarusvirus› Acinetobacter_phage_vB_AbaM_Apostate

TaxID: 2686308

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 3.85e-01 93.7% 48.5%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 40.0 3.06e-01 77.8% 27.1%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 54.0 4.80e-01 98.4% 85.7%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.61 53.0 3.97e-01 98.4% 70.6%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.60 49.0 4.42e-01 90.5% 64.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 48.0 3.86e-01 98.4% 92.7%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.32e-01 81.0% 96.5%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 47.0 2.99e-01 100.0% 42.5%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 40.0 2.60e-01 74.6% 51.3%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 47.0 3.73e-01 100.0% 78.9%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 42.0 3.38e-01 82.5% 96.1%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 44.0 3.45e-01 95.2% 56.2%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.15e-01 100.0% 68.1%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.25e-01 93.7% 84.7%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.52 44.0 3.41e-01 96.8% 65.5%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.35e-01 93.7% 97.6%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 40.0 3.19e-01 93.7% 84.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 35.0 3.67e-01 95.2% 81.0%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 40.0 3.51e-01 90.5% 60.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3722558 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.60 48.0 4.49e-01 100.0% 70.0%
4967744 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 50.0 4.29e-01 98.4% 80.0%
3260066 1129.1.1.1 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.59 43.0 3.70e-01 77.8% 59.0%
3512816 5.1.4.313 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.58 50.0 3.19e-01 100.0% 67.4%
4266100 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 49.0 3.05e-01 98.4% 37.3%
3499466 3704.1.1.0 ↗ alpha superhelices › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain › Apoptotic protease-activating factor 1 (Apaf-1) helical domain 0.56 47.0 2.58e-01 96.8% 11.2%
3964178 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 44.0 3.62e-01 95.2% 66.7%
3168220 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 47.0 3.95e-01 96.8% 77.3%
3637299 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.54 42.0 3.86e-01 92.1% 95.7%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.54 45.0 4.42e-01 100.0% 88.6%
3534391 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 41.0 3.07e-01 88.9% 90.0%
3996257 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 33.0 3.19e-01 92.1% 52.0%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.53 40.0 3.72e-01 81.0% 75.0%
3957593 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.53 44.0 3.49e-01 100.0% 73.8%
4103142 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 44.0 4.13e-01 100.0% 86.3%
3368394 4325.1.1.11 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.52 40.0 3.48e-01 82.5% 82.1%
3925547 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.52 39.0 2.79e-01 82.5% 53.3%
3300848 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.51 34.0 3.01e-01 93.7% 42.7%
3743354 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 42.0 3.65e-01 93.7% 99.0%
3804152 5.1.4.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.50 42.0 2.66e-01 98.4% 53.1%