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NC_049494.1__YP_009887076.1__HYQ24_gp056__00056

Bact-Vir

NC_049494.1__YP_009887076.1__HYQ24_gp056__00056

Identity

Accession:
NC_049494 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Hadassahvirus› Acinetobacter_phage_vB_AbaM_PhT2

TaxID: 2690230

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-88
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.62 50.0 3.61e-01 89.8% 85.4%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 49.0 4.88e-01 90.9% 83.5%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.62 39.0 4.70e-01 75.0% 100.0%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.61 51.0 4.64e-01 93.2% 83.2%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.60 48.0 4.23e-01 86.4% 64.1%
2kpmA01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.59 33.0 3.50e-01 78.4% 62.7%
3d85C00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 43.0 3.75e-01 79.5% 61.7%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 40.0 3.48e-01 75.0% 59.9%
5vakA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 49.0 3.15e-01 98.9% 51.3%
2v6kA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 3.98e-01 89.8% 67.7%
3kp9A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.55 45.0 3.78e-01 94.3% 50.0%
1e3pA02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.55 38.0 3.98e-01 72.7% 83.1%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 42.0 3.50e-01 83.0% 50.6%
1xvpB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.54 44.0 3.21e-01 88.6% 82.5%
4jgwA02 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.54 45.0 3.26e-01 89.8% 95.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 37.0 3.86e-01 70.5% 78.5%
4nufA02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 38.0 3.18e-01 83.0% 97.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710714 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 45.0 4.92e-01 85.2% 92.9%
4868274 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.62 43.0 3.36e-01 83.0% 33.5%
4301843 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.60 47.0 3.61e-01 83.0% 47.7%
4575832 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.60 46.0 3.61e-01 83.0% 47.7%
4839189 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 49.0 4.42e-01 92.0% 82.8%
4001683 109.4.1.1504 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103 0.57 48.0 2.96e-01 92.0% 28.0%
3704408 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 50.0 3.68e-01 100.0% 84.6%
4966822 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 3.39e-01 80.7% 51.8%
4213215 150.3.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 0.56 43.0 3.48e-01 96.6% 41.7%
5029883 2002.1.1.414 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form 0.56 47.0 3.25e-01 95.5% 45.2%
4437663 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.55 44.0 3.40e-01 85.2% 52.8%
5012473 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 38.0 3.52e-01 70.5% 65.5%
3028533 188.1.1.0 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.55 43.0 3.14e-01 90.9% 84.1%
3423910 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.55 45.0 4.04e-01 93.2% 66.2%
3408027 5048.1.1.1 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.53 41.0 3.09e-01 84.1% 81.7%
3175888 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.51 39.0 3.61e-01 79.5% 65.5%
4348800 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.51 38.0 3.00e-01 81.8% 64.4%
3180716 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.50 41.0 3.58e-01 89.8% 62.2%
D2 medium residues 89-147
PDB