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NC_049494.1__YP_009887137.1__HYQ24_gp117__00117

Bact-Vir

NC_049494.1__YP_009887137.1__HYQ24_gp117__00117

Identity

Accession:
NC_049494 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-100
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yuyA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.63 54.0 4.23e-01 98.2% 90.2%
1ciaA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.61 50.0 3.39e-01 92.7% 79.8%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.97e-01 94.5% 70.6%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.64e-01 92.7% 57.3%
5k9nB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.02e-01 90.9% 62.7%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 44.0 3.10e-01 100.0% 47.4%
1y8aA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 42.0 3.11e-01 94.5% 69.5%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 37.0 3.46e-01 78.2% 64.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 4.76e-01 89.1% 63.7%
4210848 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.65 55.0 4.33e-01 98.2% 93.3%
4928394 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.72e-01 89.1% 78.8%
5035276 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.32e-01 92.7% 64.4%
5079436 4020.1.1.3 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › TFX_C 0.62 48.0 4.34e-01 90.9% 61.3%
4511189 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.61 49.0 4.48e-01 96.4% 73.8%
3532621 108.1.1.67 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_PLCG2 0.61 46.0 4.41e-01 89.1% 71.4%
4991791 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.21e-01 96.4% 56.8%
3254773 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.61 51.0 3.15e-01 100.0% 56.0%
3337333 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.60 52.0 3.45e-01 100.0% 86.1%
3214664 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.83e-01 92.7% 68.2%
3602364 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.58 45.0 4.05e-01 94.5% 67.8%
4957918 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 45.0 3.16e-01 90.9% 51.1%
5060697 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 41.0 3.14e-01 89.1% 36.9%
3723026 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 40.0 2.61e-01 96.4% 21.4%