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NC_049498.1__YP_009887296.1__HYQ28_gp30__00030

Bact-Vir

NC_049498.1__YP_009887296.1__HYQ28_gp30__00030

Identity

Accession:
NC_049498 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Berryhillviridae› Ayohtrevirus› Arthrobacter_phage_Abba

TaxID: 2713256

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-100
PDB
Domain cluster: rep: S16_GE16_scaffold_10741_prodigal-single.1__X__X__00083__D1-111_115-129
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.78 64.0 6.07e-01 86.6% 82.9%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 58.0 5.39e-01 81.4% 71.5%
4qkyA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.65 40.0 4.50e-01 82.5% 81.1%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 43.0 4.59e-01 78.4% 84.3%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 31.0 3.58e-01 77.3% 65.8%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.56 35.0 4.19e-01 81.4% 100.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 33.0 3.41e-01 79.4% 58.5%
4k3bA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 42.0 4.28e-01 78.4% 84.8%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.56 44.0 4.06e-01 83.5% 72.8%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.95e-01 72.2% 94.5%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 39.0 4.19e-01 94.8% 90.2%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.52 36.0 3.48e-01 81.4% 63.0%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.43e-01 99.0% 60.1%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 3.09e-01 93.8% 68.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004672 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.80 74.0 6.86e-01 100.0% 86.7%
3981113 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.78 72.0 6.93e-01 100.0% 87.2%
3941521 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.76 70.0 6.60e-01 97.9% 93.8%
3966072 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.76 69.0 6.62e-01 100.0% 88.0%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.75 68.0 6.52e-01 100.0% 86.4%
2589713 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.74 68.0 6.21e-01 100.0% 84.0%
4888824 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.72 66.0 6.03e-01 100.0% 83.2%
3965272 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.72 67.0 6.54e-01 100.0% 92.4%
2907089 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.72 56.0 5.34e-01 83.5% 83.0%
3943067 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.66 59.0 5.23e-01 100.0% 77.1%
5038047 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.63 35.0 3.74e-01 77.3% 62.7%
3473115 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.63 29.0 3.44e-01 96.9% 63.1%
5081005 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.62 34.0 3.67e-01 77.3% 62.7%
5062146 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.62 34.0 3.65e-01 77.3% 61.9%
5026971 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.61 35.0 3.70e-01 78.4% 63.5%
4975698 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.60 34.0 3.53e-01 77.3% 58.9%
3522051 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 32.0 3.55e-01 77.3% 64.1%
5073608 304.16.1.0 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like 0.59 34.0 3.57e-01 77.3% 61.4%
5028585 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.58 33.0 3.48e-01 78.4% 61.2%
5035224 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.57 34.0 3.56e-01 78.4% 63.3%
3606537 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.56 42.0 3.13e-01 80.4% 74.6%
5010581 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 48.0 4.52e-01 92.8% 84.3%
4940810 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 29.0 3.38e-01 73.2% 74.6%
3718955 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 3.53e-01 77.3% 68.4%
3236544 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.52 45.0 3.31e-01 99.0% 77.5%
4946197 2003.1.5.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.52 45.0 3.73e-01 99.0% 78.4%
5077347 2003.1.5.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.52 45.0 3.70e-01 99.0% 78.9%
3243038 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.52 44.0 3.14e-01 100.0% 77.9%
4029063 2003.1.5.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.51 44.0 3.41e-01 100.0% 84.3%
None — 0.50 43.0 3.61e-01 100.0% 78.4%
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.50 29.0 2.78e-01 96.9% 46.1%