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NC_049498.1__YP_009887297.1__HYQ28_gp31__00031

Bact-Vir

NC_049498.1__YP_009887297.1__HYQ28_gp31__00031

Identity

Accession:
NC_049498 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Berryhillviridae› Ayohtrevirus› Arthrobacter_phage_Abba

TaxID: 2713256

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 90-184
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04865.20 best Baseplate_J 36.4 8.40e-09 94.7% 87.5%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 54.0 5.99e-01 85.3% 86.7%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.75 58.0 5.91e-01 97.9% 84.6%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 52.0 5.15e-01 91.6% 76.5%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 54.0 5.27e-01 86.3% 77.1%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 50.0 5.10e-01 85.3% 82.8%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.66 48.0 3.61e-01 90.5% 31.4%
6oauA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.65 55.0 5.08e-01 98.9% 73.8%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.64 50.0 3.96e-01 86.3% 85.4%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 36.0 3.41e-01 84.2% 47.7%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 56.0 5.43e-01 100.0% 98.1%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 49.0 4.84e-01 87.4% 77.9%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 45.0 4.47e-01 97.9% 77.6%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 44.0 4.28e-01 91.6% 69.8%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.59 47.0 3.87e-01 86.3% 89.2%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 41.0 4.05e-01 97.9% 67.6%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 51.0 4.41e-01 100.0% 81.9%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 38.0 3.39e-01 77.9% 44.6%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 46.0 4.43e-01 85.3% 75.2%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 46.0 4.29e-01 86.3% 81.4%
7ui8A01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 43.0 4.26e-01 88.4% 75.5%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 44.0 4.29e-01 88.4% 75.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 49.0 4.61e-01 97.9% 77.5%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.57 42.0 3.12e-01 77.9% 77.5%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.28e-01 100.0% 75.5%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 46.0 4.45e-01 91.6% 77.6%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 40.0 3.24e-01 75.8% 77.9%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 43.0 4.17e-01 86.3% 82.6%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.89e-01 95.8% 56.3%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.77e-01 100.0% 54.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.91e-01 75.8% 96.6%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 4.28e-01 100.0% 95.4%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.76e-01 100.0% 55.1%
3ai4A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 45.0 3.43e-01 97.9% 75.4%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 44.0 4.24e-01 98.9% 79.3%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.94e-01 77.9% 100.0%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 38.0 3.36e-01 78.9% 63.3%
2zaiB03 2.60.40.3020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.93e-01 98.9% 78.5%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 41.0 3.56e-01 90.5% 86.4%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 37.0 2.96e-01 77.9% 57.8%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.90e-01 100.0% 68.9%
8a7dC01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.03e-01 84.2% 89.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977754 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.89 81.0 8.15e-01 100.0% 95.8%
4049734 1.16.1.5 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › Baseplate_J 0.86 64.0 7.12e-01 100.0% 97.3%
3948566 1.16.1.4 ↗ beta barrels › cradle loop barrel › Baseplate wedge protein gp6 domain I › Baseplate wedge protein gp6 domain I › T6SS_TssF 0.85 74.0 7.67e-01 100.0% 96.7%
4957576 1.1.8.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.83 76.0 7.70e-01 98.9% 96.8%
3981035 1.1.8.23 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › T6SS_TssF 0.79 74.0 7.24e-01 100.0% 94.0%
1562394 1.1.8.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA 0.78 72.0 6.89e-01 100.0% 98.1%
4976915 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.76 55.0 5.49e-01 84.2% 72.4%
159 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.75 58.0 5.94e-01 97.9% 85.6%
3166182 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.71 56.0 5.76e-01 85.3% 87.8%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.70 54.0 4.97e-01 85.3% 64.2%
3166433 1.1.8.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.68 57.0 5.84e-01 100.0% 95.6%
4299010 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 53.0 5.31e-01 87.4% 83.2%
3968633 1.1.8.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.67 56.0 5.73e-01 98.9% 97.8%
4944288 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 56.0 5.41e-01 91.6% 83.8%
5054836 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 52.0 4.90e-01 87.4% 85.2%
3223399 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.63 45.0 3.56e-01 75.8% 83.3%
4071075 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.63 55.0 5.38e-01 100.0% 89.5%
3236126 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.63 54.0 4.97e-01 97.9% 72.8%
5066091 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 54.0 4.84e-01 97.9% 80.0%
3665168 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.62 56.0 5.19e-01 100.0% 96.7%
4030690 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 48.0 4.58e-01 97.9% 76.4%
3401798 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 52.0 4.86e-01 100.0% 80.8%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.27e-01 78.9% 84.0%
3598842 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 50.0 4.32e-01 95.8% 62.7%
4977991 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 46.0 4.19e-01 85.3% 77.7%
3469279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 34.0 3.73e-01 75.8% 73.3%
3526900 269.1.1.0 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.56 41.0 2.78e-01 78.9% 42.0%
3968190 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 31.0 3.14e-01 84.2% 51.6%
3645098 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.55 48.0 3.94e-01 100.0% 63.9%
3715218 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 49.0 4.13e-01 100.0% 88.1%
4237421 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 47.0 4.08e-01 100.0% 94.8%
3256399 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.54 46.0 4.28e-01 100.0% 82.3%
3706034 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 47.0 4.22e-01 100.0% 92.9%
3809400 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.54 45.0 3.24e-01 96.8% 29.5%
3967792 11.1.1.148 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixG_C 0.54 43.0 4.18e-01 100.0% 80.0%
3244415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.07e-01 90.5% 84.2%
3932049 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 45.0 3.84e-01 100.0% 58.3%
4944949 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.13e-01 100.0% 69.7%
3275811 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 46.0 4.14e-01 100.0% 96.3%
3255173 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.51 36.0 3.42e-01 74.7% 80.0%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.51 40.0 3.57e-01 85.3% 86.7%
3571451 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.50 36.0 3.40e-01 100.0% 60.0%
D2 high residues 192-285
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h2tA01 3.30.300.200 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.82 59.0 6.71e-01 79.8% 98.6%
2v7bA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.76 55.0 5.44e-01 79.8% 72.2%
1lciA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.75 53.0 5.28e-01 79.8% 69.7%
4wd1A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.74 50.0 4.50e-01 79.8% 50.8%
1nnnA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.74 53.0 4.89e-01 80.9% 58.7%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.73 51.0 5.06e-01 80.9% 69.8%
6ijbA01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.73 51.0 5.08e-01 79.8% 69.4%
5uptA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.73 51.0 4.89e-01 79.8% 63.6%
8affD01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.72 51.0 5.51e-01 79.8% 87.2%
3w5xA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.71 52.0 5.57e-01 79.8% 90.0%
5ey9A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.69 53.0 4.79e-01 80.9% 74.6%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.69 53.0 5.17e-01 80.9% 77.2%
4l4qA02 3.30.300.340 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, N-terminal domain 0.69 53.0 4.75e-01 80.9% 66.9%
4g1iA02 3.30.300.170 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.68 48.0 5.44e-01 79.8% 97.2%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.68 51.0 5.00e-01 79.8% 88.3%
5nfmA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.67 48.0 5.28e-01 79.8% 93.3%
3e7wA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.67 49.0 4.69e-01 80.9% 65.8%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.67 48.0 4.67e-01 79.8% 67.6%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.66 50.0 4.26e-01 80.9% 59.5%
1p7lA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.66 50.0 4.79e-01 79.8% 82.1%
2nclA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.64 46.0 4.95e-01 79.8% 87.7%
3laxA00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.63 51.0 4.97e-01 87.2% 78.3%
1j79A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.63 39.0 2.64e-01 93.6% 16.9%
4p4mA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 46.0 4.38e-01 79.8% 93.0%
3hj4A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 46.0 4.17e-01 79.8% 80.9%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 46.0 4.47e-01 80.9% 89.8%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 46.0 4.41e-01 80.9% 86.4%
1mkyA03 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 46.0 4.68e-01 79.8% 83.3%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 49.0 4.39e-01 87.2% 80.3%
3n54B03 3.30.300.210 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 0.60 48.0 4.24e-01 88.3% 97.9%
3oguA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.60 45.0 4.14e-01 80.9% 83.7%
2ayaA00 3.30.300.150 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DNA polymerase III, tau subunit, domain V 0.59 49.0 4.41e-01 100.0% 66.4%
4zrlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 42.0 3.98e-01 79.8% 87.2%
3w6sC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.21e-01 77.7% 65.9%
2kdnA00 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.56 47.0 4.55e-01 100.0% 81.5%
1ofuA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.55 38.0 3.87e-01 97.9% 72.0%
3shpA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.43e-01 85.1% 72.5%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.51 41.0 3.98e-01 89.4% 95.5%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1870491 327.20.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Baseplate structural protein gp6 C-terminal domain I › Baseplate structural protein gp6 C-terminal domain I › Gp6_C-I 0.85 61.0 6.92e-01 79.8% 97.2%
4140245 327.20.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Baseplate structural protein gp6 C-terminal domain I › Baseplate structural protein gp6 C-terminal domain I › PF26078 0.85 63.0 7.06e-01 76.6% 96.0%
5004556 327.20.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Baseplate structural protein gp6 C-terminal domain I › Baseplate structural protein gp6 C-terminal domain I › PF26078 0.84 79.0 7.79e-01 100.0% 97.0%
5008339 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.76 52.0 4.68e-01 79.8% 52.8%
5049385 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.75 55.0 5.19e-01 79.8% 64.5%
4980949 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.75 55.0 5.80e-01 80.9% 84.7%
4301550 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.74 54.0 5.21e-01 79.8% 67.6%
4681059 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.74 54.0 4.74e-01 80.9% 52.6%
4583151 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.74 55.0 4.80e-01 80.9% 53.7%
4947284 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.74 54.0 4.90e-01 80.9% 57.6%
4980948 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.73 54.0 5.67e-01 80.9% 84.7%
4974644 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.73 53.0 4.14e-01 79.8% 36.4%
3969404 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.73 52.0 4.65e-01 79.8% 53.8%
3722096 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.72 55.0 5.65e-01 79.8% 86.7%
4967501 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.72 54.0 4.92e-01 80.9% 60.8%
3956496 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.72 53.0 5.44e-01 79.8% 80.0%
3447146 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.71 53.0 5.05e-01 79.8% 66.4%
4437921 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.71 54.0 5.39e-01 79.8% 81.1%
2831883 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.70 47.0 5.26e-01 86.2% 89.0%
4613769 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.70 53.0 5.65e-01 78.7% 93.8%
4414684 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.70 54.0 5.62e-01 80.9% 89.4%
4220601 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.70 54.0 5.76e-01 80.9% 95.0%
4015680 327.2.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like 0.69 50.0 5.11e-01 79.8% 77.8%
3861384 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.69 50.0 5.33e-01 79.8% 88.7%
4046978 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.69 52.0 5.11e-01 79.8% 77.0%
3590018 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.69 47.0 5.26e-01 79.8% 95.7%
4133380 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.68 52.0 5.55e-01 87.2% 93.8%
5022204 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.68 52.0 5.21e-01 79.8% 85.3%
3186537 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.68 51.0 4.46e-01 80.9% 52.4%
4386717 327.13.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.67 51.0 4.78e-01 79.8% 70.4%
3667910 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.67 49.0 5.12e-01 80.9% 83.5%
3974097 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.67 51.0 4.71e-01 79.8% 64.2%
1712134 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.67 54.0 5.12e-01 87.2% 76.3%
3176426 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.67 48.0 4.79e-01 79.8% 71.4%
3385859 327.6.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › NifU 0.67 52.0 5.37e-01 81.9% 97.7%
4341134 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.67 50.0 4.46e-01 79.8% 68.9%
5065601 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.67 55.0 4.29e-01 87.2% 46.3%
5053524 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.67 51.0 4.73e-01 80.9% 64.2%
4969921 327.2.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › NTP_transf_2 0.66 51.0 4.82e-01 80.9% 69.1%
4945720 327.17.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C 0.66 50.0 4.74e-01 79.8% 79.1%
4223021 327.13.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.66 50.0 4.52e-01 79.8% 61.6%
5000389 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 49.0 4.55e-01 80.9% 61.7%
3196423 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.66 50.0 4.58e-01 79.8% 68.3%
4869876 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.66 50.0 5.25e-01 80.9% 91.9%
4968119 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.66 58.0 5.28e-01 96.8% 76.0%
4932862 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.65 48.0 4.77e-01 86.2% 73.0%
4981292 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.65 59.0 3.87e-01 100.0% 65.9%
5049298 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.65 50.0 4.59e-01 80.9% 64.2%
3729922 327.5.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_3 0.65 49.0 4.38e-01 79.8% 58.5%
3957434 327.17.1.8 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M, S-AdoMet_synt_C 0.65 53.0 3.64e-01 86.2% 33.0%
4679606 327.10.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.65 48.0 4.98e-01 79.8% 87.8%
5062833 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.64 48.0 4.24e-01 79.8% 60.7%
3787563 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.64 49.0 4.74e-01 80.9% 81.9%
5010882 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.64 59.0 3.89e-01 100.0% 64.7%
3195037 4114.1.1.0 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like 0.64 53.0 4.25e-01 89.4% 84.9%
3183222 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.64 46.0 4.77e-01 80.9% 78.9%
4967340 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.64 47.0 4.77e-01 84.0% 76.8%
3228714 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.64 47.0 3.98e-01 79.8% 69.7%
3602696 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.63 48.0 4.77e-01 80.9% 78.0%
3661094 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.63 50.0 5.06e-01 85.1% 89.5%
4933022 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.63 47.0 4.44e-01 86.2% 64.3%
4930275 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.63 48.0 4.93e-01 80.9% 84.4%
5073126 327.5.1.9 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding 0.63 53.0 3.50e-01 89.4% 57.8%
5021453 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.63 47.0 4.77e-01 79.8% 86.3%
187529 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.63 48.0 4.39e-01 80.9% 63.4%
4026116 327.2.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like 0.63 46.0 4.57e-01 79.8% 73.7%
3983684 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.62 47.0 4.79e-01 78.7% 86.7%
4965023 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.62 47.0 4.91e-01 79.8% 88.2%
3991615 327.2.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA 0.62 47.0 4.69e-01 81.9% 78.0%
5039747 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.62 46.0 4.47e-01 79.8% 71.2%
4053920 327.13.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.62 50.0 4.64e-01 87.2% 82.5%
1179397 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.62 46.0 3.93e-01 79.8% 60.3%
4947690 327.5.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › GH3_C 0.62 46.0 4.09e-01 80.9% 60.0%
326556 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.61 49.0 4.41e-01 87.2% 80.3%
4185835 327.13.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.61 50.0 4.57e-01 90.4% 82.4%
3362831 3186.1.1.0 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.60 49.0 4.43e-01 89.4% 93.1%
5071566 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.60 49.0 4.29e-01 88.3% 80.7%
5068883 316.1.1.27 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.59 48.0 4.37e-01 87.2% 70.4%
3254444 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.59 45.0 3.57e-01 80.9% 51.8%
4951347 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.59 44.0 3.79e-01 80.9% 51.6%
5038425 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 44.0 4.25e-01 80.9% 71.4%
4928329 327.17.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_N 0.58 53.0 3.73e-01 100.0% 48.7%
4970157 327.17.1.4 ↗ a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_C 0.57 52.0 3.44e-01 100.0% 42.7%
3701795 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 47.0 4.29e-01 92.6% 82.0%
3241140 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.55 38.0 2.32e-01 72.3% 12.5%
3712363 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.53 39.0 3.30e-01 79.8% 72.7%
D3 high residues 289-375
PDB
Domain cluster: rep: NC_054725.1__YP_010059442.1__KHQ85_gp192__00192__D466-576
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m21F00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.69 39.0 4.34e-01 96.6% 70.1%
3e6qA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.64 48.0 4.22e-01 79.3% 90.5%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.59 42.0 3.95e-01 75.9% 89.8%
3it4D02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.59 52.0 4.71e-01 100.0% 80.7%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 40.0 4.08e-01 75.9% 100.0%
2fltA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.56 46.0 4.21e-01 89.7% 97.4%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.91e-01 73.6% 95.2%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.99e-01 81.6% 98.9%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.85e-01 92.0% 69.0%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.65e-01 79.3% 96.2%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.46e-01 74.7% 72.8%
2ifxA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 36.0 3.69e-01 75.9% 97.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002740 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.95 91.0 8.25e-01 100.0% 97.3%
5004557 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.90 85.0 7.74e-01 100.0% 99.1%
4957578 3228.1.1.2 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.88 83.0 8.26e-01 100.0% 98.9%
4565831 3228.1.1.2 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.82 76.0 7.50e-01 100.0% 100.0%
3943567 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.82 75.0 7.11e-01 97.7% 99.0%
4093853 3228.1.1.2 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.80 71.0 7.23e-01 98.9% 100.0%
3977755 3228.1.1.2 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.79 71.0 7.25e-01 98.9% 100.0%
3946544 3228.1.1.0 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.78 72.0 6.75e-01 100.0% 96.2%
1870475 3228.1.1.2 ↗ a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.77 69.0 6.87e-01 100.0% 94.5%
3965915 315.1.1.3 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › CHMI 0.65 47.0 4.18e-01 74.7% 89.4%
3395489 229.1.1.7 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.62 53.0 5.26e-01 98.9% 92.2%
3489796 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.62 55.0 5.16e-01 96.6% 95.2%
3313414 229.1.1.7 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.61 55.0 5.46e-01 98.9% 95.6%
3244128 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.19e-01 73.6% 89.5%
3646041 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 3.83e-01 73.6% 84.3%
4554051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 4.57e-01 71.3% 100.0%
5044288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.22e-01 73.6% 90.0%
5045142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 4.18e-01 73.6% 89.7%
3932917 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.13e-01 78.2% 93.3%
3740395 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.56 50.0 4.73e-01 100.0% 95.2%
1225034 315.1.1.3 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › CHMI 0.56 46.0 3.86e-01 88.5% 94.5%
3772634 101.1.2.397 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.56 39.0 4.07e-01 73.6% 90.0%
3467284 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.55 43.0 4.01e-01 83.9% 85.2%
5024392 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 45.0 3.15e-01 92.0% 87.0%
4055578 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.71e-01 87.4% 75.0%
3240793 101.1.2.556 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26288 0.53 40.0 4.00e-01 80.5% 87.8%
3744259 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.52 42.0 3.70e-01 87.4% 74.6%
4534152 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.52 36.0 3.16e-01 74.7% 91.0%
4957408 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.50 43.0 4.12e-01 97.7% 98.1%
D4 medium residues 1-86
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lp8A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 4.50e-01 81.4% 90.4%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 45.0 3.52e-01 74.4% 46.7%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 46.0 4.39e-01 82.6% 66.7%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 41.0 4.03e-01 74.4% 62.6%
3gzfD00 1.10.150.420 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus 0.62 31.0 3.08e-01 83.7% 42.9%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 40.0 3.33e-01 75.6% 38.7%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.57 37.0 4.35e-01 72.1% 98.3%
7qpgW01 1.10.357.150 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.56 40.0 3.10e-01 91.9% 33.7%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.55 36.0 3.98e-01 91.9% 86.6%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 38.0 3.05e-01 74.4% 100.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.54 41.0 4.00e-01 86.0% 73.7%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 3.55e-01 100.0% 40.6%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 37.0 2.95e-01 77.9% 98.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988108 1049.2.1.0 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.81 66.0 6.18e-01 87.2% 90.5%
5002735 1049.2.1.0 ↗ alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain 0.76 62.0 6.00e-01 86.0% 85.3%
3723625 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.67 47.0 4.02e-01 73.3% 83.0%
3710862 192.29.1.197 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 0.63 49.0 4.46e-01 84.9% 75.8%
3646014 604.1.1.61 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF6857 0.63 43.0 3.11e-01 70.9% 34.8%
3607008 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.62 48.0 4.70e-01 84.9% 75.8%
3585613 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.61 52.0 3.94e-01 96.5% 50.2%
3747621 193.1.1.62 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CC_Cfap43 0.60 45.0 3.72e-01 83.7% 43.1%
3883762 3718.1.1.5 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › Meis_PKNOX_N 0.59 47.0 4.24e-01 86.0% 61.7%
4452391 604.39.1.5 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt 0.59 43.0 3.32e-01 86.0% 32.8%
3741700 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.59 39.0 3.54e-01 73.3% 50.4%
3184140 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.59 47.0 4.33e-01 88.4% 93.9%
4558420 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 46.0 4.89e-01 84.9% 100.0%
3792329 109.10.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.58 44.0 3.19e-01 82.6% 75.2%
3285485 191.1.1.64 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › DUF4254 0.57 47.0 3.92e-01 90.7% 56.1%
3294620 3755.3.1.290 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PPI_helical 0.56 44.0 3.19e-01 84.9% 69.4%
3505328 109.4.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3535 0.56 45.0 2.92e-01 90.7% 38.6%
4928145 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.56 41.0 4.19e-01 90.7% 83.7%
2816978 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.54 47.0 3.20e-01 97.7% 83.3%
3857450 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.54 48.0 3.96e-01 100.0% 74.2%
3860840 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 29.0 2.12e-01 84.9% 19.1%
4176828 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 37.0 4.05e-01 73.3% 91.4%
4962910 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.53 42.0 3.60e-01 84.9% 80.7%
4025845 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.51 44.0 3.40e-01 100.0% 71.0%