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NC_049806.1__YP_009900408.1__H1N70_gp43__00043

Bact-Vir

NC_049806.1__YP_009900408.1__H1N70_gp43__00043

Identity

Accession:
NC_049806 ↗
Kingdom:
phage

Quality

40.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Teubervirus› Lactococcus_phage_LW31

TaxID: 1965478

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 257-321
PDB
Domain cluster: rep: SRR1747022_scaffold_43_prodigal-single.1__X__X__00294__D418-497
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.76 52.0 4.98e-01 72.3% 64.5%
2dsmA00 3.30.40.30 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain 0.73 45.0 4.35e-01 81.5% 55.6%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 57.0 4.55e-01 93.8% 48.0%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.67 41.0 3.92e-01 81.5% 52.6%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 54.0 5.23e-01 93.8% 79.7%
1wemA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 50.0 4.77e-01 83.1% 89.5%
7v8fB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 56.0 4.99e-01 98.5% 100.0%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 3.29e-01 73.8% 34.4%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.60 42.0 4.17e-01 92.3% 70.0%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 52.0 4.65e-01 100.0% 90.4%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 38.0 4.18e-01 83.1% 81.5%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 49.0 4.34e-01 100.0% 65.3%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 48.0 4.93e-01 100.0% 98.4%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 50.0 4.55e-01 100.0% 94.3%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 44.0 4.58e-01 93.8% 93.3%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 49.0 4.48e-01 98.5% 97.7%
1a7iA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.56 45.0 4.68e-01 95.4% 100.0%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 46.0 4.45e-01 92.3% 87.5%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 45.0 4.63e-01 93.8% 93.7%
2cuqA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 47.0 4.44e-01 100.0% 78.8%
2ysmA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 46.0 3.96e-01 98.5% 73.9%
1x68A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 39.0 3.73e-01 87.7% 64.5%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 47.0 4.34e-01 98.5% 75.6%
2mbvA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 47.0 4.16e-01 98.5% 71.9%
4jcjB01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 47.0 4.76e-01 100.0% 98.5%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 46.0 4.50e-01 100.0% 87.5%
2kkxA00 3.30.40.80 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Effector protein NleG 0.54 37.0 3.32e-01 75.4% 67.6%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.53 45.0 4.25e-01 100.0% 77.8%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.53 46.0 4.34e-01 100.0% 83.7%
2iybE00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 40.0 4.07e-01 93.8% 87.5%
1ul4A01 4.10.1100.10 Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain 0.51 41.0 4.11e-01 92.3% 100.0%
4jcjC02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.50 40.0 4.20e-01 90.8% 100.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716795 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.84 45.0 6.02e-01 81.5% 100.0%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.83 68.0 6.88e-01 89.2% 100.0%
3242999 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.83 49.0 5.52e-01 90.8% 78.0%
3540237 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 39.0 5.34e-01 78.5% 100.0%
3830263 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.82 59.0 6.63e-01 89.2% 98.0%
4929513 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 48.0 5.96e-01 87.7% 97.5%
5080685 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.80 70.0 6.86e-01 95.4% 98.6%
4948562 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 48.0 5.65e-01 83.1% 88.9%
8176 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 41.0 5.14e-01 83.1% 100.0%
5031996 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 61.0 6.57e-01 89.2% 98.2%
5074886 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 70.0 6.86e-01 100.0% 100.0%
3510157 376.1.5.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.77 52.0 5.99e-01 78.5% 100.0%
3643916 375.1.1.235 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.77 45.0 5.46e-01 86.2% 95.0%
3211971 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 47.0 5.67e-01 86.2% 100.0%
3301384 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 60.0 6.52e-01 87.7% 98.2%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.76 45.0 5.37e-01 86.2% 95.0%
5042937 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 56.0 6.06e-01 93.8% 92.7%
3597770 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.76 52.0 5.77e-01 70.8% 96.0%
3525060 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.75 52.0 5.62e-01 72.3% 100.0%
3307915 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 60.0 6.07e-01 87.7% 84.6%
4466003 376.1.3.44 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.75 66.0 6.62e-01 98.5% 100.0%
5067930 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 51.0 4.75e-01 100.0% 57.5%
3847015 192.7.1.79 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FYVE_2 0.74 59.0 6.18e-01 93.8% 91.7%
3562969 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.74 59.0 6.15e-01 93.8% 91.7%
3592068 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 59.0 6.17e-01 96.9% 100.0%
4985634 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 62.0 6.31e-01 93.8% 100.0%
3606495 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 63.0 6.41e-01 98.5% 100.0%
3554759 376.1.3.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.71 54.0 5.62e-01 81.5% 88.3%
3472338 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 56.0 5.78e-01 93.8% 91.7%
4951718 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 48.0 5.34e-01 70.8% 100.0%
3466575 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 57.0 5.71e-01 87.7% 86.2%
5061253 376.1.3.97 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.70 54.0 5.11e-01 100.0% 70.0%
3414632 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 60.0 5.39e-01 96.9% 72.2%
3260068 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.69 55.0 5.35e-01 84.6% 100.0%
3680961 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 47.0 5.16e-01 72.3% 100.0%
3599075 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 53.0 5.64e-01 87.7% 100.0%
3418670 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.67 50.0 5.06e-01 80.0% 86.2%
3520763 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 49.0 4.67e-01 81.5% 66.7%
3627614 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.67 53.0 5.47e-01 87.7% 91.7%
3700825 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.66 54.0 4.71e-01 89.2% 60.0%
3853521 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 49.0 5.13e-01 100.0% 85.0%
3405783 376.1.3.30 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF 0.66 57.0 4.80e-01 93.8% 90.5%
3706927 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.66 54.0 5.58e-01 89.2% 98.3%
3478913 376.1.3.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.65 56.0 5.11e-01 100.0% 71.8%
3798139 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 54.0 4.71e-01 93.8% 62.1%
3799773 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.63 41.0 4.94e-01 72.3% 97.8%
3893430 377.1.1.51 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM_FHL2-3_N 0.62 49.0 5.10e-01 90.8% 93.3%
5076094 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 50.0 5.16e-01 90.8% 98.3%
3921863 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.60 50.0 4.95e-01 92.3% 85.7%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.60 54.0 4.91e-01 100.0% 95.3%
4022452 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 53.0 4.54e-01 100.0% 97.1%
3796017 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 43.0 4.13e-01 78.5% 97.3%
3170384 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 45.0 4.68e-01 92.3% 90.0%
3430371 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 52.0 4.59e-01 100.0% 88.4%
3924159 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 50.0 4.44e-01 93.8% 68.9%
3829033 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 50.0 4.74e-01 98.5% 100.0%
3326051 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.58 51.0 4.53e-01 100.0% 89.5%
3559289 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 51.0 4.69e-01 100.0% 98.8%
3573945 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.57 50.0 4.79e-01 98.5% 98.7%
3211179 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 50.0 4.58e-01 100.0% 98.8%
3728775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 50.0 4.59e-01 98.5% 90.6%
4094838 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 46.0 4.65e-01 93.8% 90.8%
3914982 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 46.0 4.74e-01 96.9% 98.3%
3683169 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 49.0 4.27e-01 100.0% 88.0%
3380766 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 47.0 4.18e-01 100.0% 86.0%
3852695 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.55 44.0 4.58e-01 92.3% 96.7%
D2 medium residues 92-155
PDB
D3 medium residues 175-193_212-249
PDB