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NC_049806.1__YP_009900410.1__H1N70_gp45__00045

Bact-Vir

NC_049806.1__YP_009900410.1__H1N70_gp45__00045

Identity

Accession:
NC_049806 ↗
Kingdom:
phage

Quality

57.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Teubervirus› Lactococcus_phage_LW31

TaxID: 1965478

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-156
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 88.0 7.93e-01 100.0% 75.0%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.71 48.0 3.35e-01 100.0% 23.3%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 47.0 3.98e-01 100.0% 45.3%
1grjA02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.66 58.0 5.08e-01 100.0% 79.2%
8h68A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.65 46.0 3.01e-01 100.0% 17.7%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 44.0 3.70e-01 100.0% 42.0%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 54.0 5.35e-01 94.2% 100.0%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.62 46.0 4.18e-01 100.0% 58.3%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 45.0 3.68e-01 80.8% 89.5%
4qglA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 53.0 3.70e-01 98.1% 75.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.61 46.0 4.26e-01 100.0% 65.2%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 41.0 3.14e-01 100.0% 30.0%
2wcyA01 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 39.0 3.53e-01 100.0% 49.3%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 2.87e-01 82.7% 42.3%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 39.0 4.10e-01 100.0% 80.9%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 46.0 4.00e-01 100.0% 57.8%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.53e-01 90.4% 83.2%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.56 46.0 3.50e-01 100.0% 81.5%
3purA02 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.55 41.0 2.58e-01 100.0% 14.4%
3gd0A01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.55 44.0 2.94e-01 98.1% 96.4%
2g5gX01 3.40.50.11550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.20e-01 100.0% 99.0%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 44.0 4.49e-01 100.0% 92.0%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.54 44.0 2.84e-01 98.1% 71.7%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 44.0 2.92e-01 100.0% 49.0%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 47.0 3.85e-01 100.0% 58.5%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 45.0 3.68e-01 100.0% 93.0%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 3.16e-01 90.4% 83.1%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 40.0 3.17e-01 88.5% 82.5%
1ghpA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 2.90e-01 100.0% 85.2%
6bn3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 2.89e-01 100.0% 83.9%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 40.0 4.11e-01 100.0% 91.8%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 46.0 2.82e-01 100.0% 22.7%
5hw3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 2.81e-01 100.0% 82.9%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.50 45.0 4.21e-01 100.0% 82.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.96 88.0 7.89e-01 100.0% 73.9%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.81 73.0 6.15e-01 100.0% 62.4%
3954522 3108.1.1.0 ↗ a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 0.72 63.0 5.75e-01 100.0% 95.7%
3595896 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.70 46.0 4.94e-01 100.0% 80.0%
5077796 304.104.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfolobus fructose-1,6-bisphosphatase-like › Sulfolobus fructose-1,6-bisphosphatase-like › FBPase_3 0.70 51.0 3.04e-01 100.0% 11.2%
3610326 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.69 47.0 5.18e-01 100.0% 92.5%
3512155 560.1.1.3 ↗ few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 0.69 46.0 3.78e-01 100.0% 37.9%
3251202 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 48.0 3.51e-01 100.0% 30.0%
3705470 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.66 46.0 4.89e-01 100.0% 84.4%
4004207 11.1.4.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th 0.66 46.0 3.98e-01 100.0% 47.5%
3620613 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 50.0 5.40e-01 100.0% 95.6%
3929391 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 57.0 4.50e-01 100.0% 66.4%
5047755 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.65 54.0 3.87e-01 100.0% 33.6%
3330429 101.1.9.83 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM 0.65 48.0 3.71e-01 98.1% 37.3%
3518250 822.2.1.0 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like 0.64 42.0 4.59e-01 100.0% 87.5%
3276203 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.61 45.0 3.42e-01 80.8% 71.5%
3829832 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 48.0 3.96e-01 100.0% 72.7%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 47.0 4.79e-01 100.0% 96.0%
5026915 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 4.74e-01 100.0% 92.0%
5020380 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.57 49.0 3.34e-01 100.0% 68.5%
1392732 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 44.0 3.54e-01 90.4% 81.7%
5027350 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 46.0 3.35e-01 100.0% 33.3%
5047668 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 45.0 2.87e-01 100.0% 18.1%
3400352 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.56 43.0 4.33e-01 100.0% 81.5%
4990345 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 45.0 4.62e-01 100.0% 94.0%
3227378 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.55 49.0 3.29e-01 100.0% 96.8%
5032187 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 47.0 4.68e-01 100.0% 96.4%
3805637 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.54 42.0 3.68e-01 98.1% 56.2%
3674426 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 47.0 3.11e-01 100.0% 31.2%
4566976 375.14.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) 0.53 35.0 3.79e-01 98.1% 87.5%
3190961 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 46.0 4.22e-01 100.0% 92.9%
3650874 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 41.0 3.17e-01 92.3% 82.1%
3445679 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.53 38.0 3.94e-01 100.0% 85.4%
3385376 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 45.0 3.46e-01 100.0% 61.6%
3998594 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 41.0 3.68e-01 98.1% 61.3%
4031792 2004.1.1.36 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.51 46.0 2.95e-01 100.0% 24.8%
3782443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 45.0 3.18e-01 100.0% 45.5%
3600630 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.51 45.0 4.00e-01 100.0% 97.3%
3206963 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.50 44.0 2.71e-01 98.1% 17.0%
D2 medium residues 1-103
PDB