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NC_049808.1__YP_009900557.1__H1N72_gp17__00017
Bact-VirNC_049808.1__YP_009900557.1__H1N72_gp17__00017
Identity
- Accession:
- NC_049808 ↗
- Kingdom:
- phage
Quality
88.8
mean pLDDT
Taxonomy
TaxID: 2656515
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-148
Domain cluster:
rep: FN667788.1__CBJ93835.1__CPT_0026__00026__D40-166
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xdnA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.69 | 64.0 | 5.87e-01 | 100.0% | 99.4% |
| 2igtA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 24.0 | 3.06e-01 | 78.5% | 63.1% |
| 1vs0A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.58 | 49.0 | 5.08e-01 | 100.0% | 100.0% |
| 5teqA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.58 | 46.0 | 3.80e-01 | 95.0% | 46.8% |
| 3d6wB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 26.0 | 3.31e-01 | 100.0% | 72.9% |
| 2cfmA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.56 | 51.0 | 4.29e-01 | 100.0% | 61.2% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 28.0 | 3.60e-01 | 98.3% | 98.3% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 43.0 | 3.16e-01 | 86.8% | 91.4% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 26.0 | 3.31e-01 | 94.2% | 78.3% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 22.0 | 3.27e-01 | 97.5% | 95.7% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.52 | 26.0 | 3.23e-01 | 93.4% | 80.9% |
| 3ed4A02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 30.0 | 3.47e-01 | 90.1% | 83.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5008249 | 304.131.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain | 0.69 | 38.0 | 3.64e-01 | 83.5% | 46.7% |
| 3270724 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.64 | 51.0 | 4.08e-01 | 100.0% | 43.4% |
| 4680909 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.61 | 48.0 | 3.49e-01 | 100.0% | 30.4% |
| 4027847 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.57 | 49.0 | 3.98e-01 | 100.0% | 50.9% |
| None | — | 0.53 | 40.0 | 2.46e-01 | 77.7% | 23.2% | |
| 4241499 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 33.0 | 3.60e-01 | 100.0% | 74.8% |
D2
high
residues 151-202
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nuhB03 | 3.10.20.690 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 47.0 | 4.00e-01 | 73.1% | 82.0% |
| 1cscA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.66 | 45.0 | 2.78e-01 | 71.2% | 47.9% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 46.0 | 4.17e-01 | 82.7% | 87.7% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.61 | 42.0 | 3.08e-01 | 73.1% | 85.8% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 49.0 | 3.43e-01 | 100.0% | 72.6% |
| 4xvcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 49.0 | 3.09e-01 | 94.2% | 43.1% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.58 | 45.0 | 3.07e-01 | 86.5% | 28.9% |
| 5z2mB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.58 | 45.0 | 3.47e-01 | 92.3% | 51.8% |
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 3.66e-01 | 82.7% | 74.7% |
| 4r4xA02 | 2.60.120.1570 | Mainly Beta › Sandwich › Jelly Rolls › Peptide-N-glycosidase F, N-terminal domain | 0.56 | 43.0 | 3.04e-01 | 90.4% | 47.1% |
| 2bf1A00 | 2.170.40.20 | Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein | 0.55 | 44.0 | 2.81e-01 | 92.3% | 31.2% |
| 1fthA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 43.0 | 3.34e-01 | 84.6% | 85.5% |
| 5mp7A01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 44.0 | 3.22e-01 | 94.2% | 84.0% |
| 3oeeY02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.54 | 42.0 | 3.22e-01 | 90.4% | 69.9% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 44.0 | 2.79e-01 | 100.0% | 34.5% |
| 3c7aA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 42.0 | 2.95e-01 | 96.2% | 62.9% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.53 | 42.0 | 3.21e-01 | 88.5% | 42.3% |
| 4j5tA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 43.0 | 2.58e-01 | 100.0% | 51.9% |
| 3duzA03 | 6.10.250.3010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 39.0 | 3.43e-01 | 86.5% | 55.8% |
| 6nrzA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 42.0 | 2.64e-01 | 100.0% | 26.5% |
| 3u5eU00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 38.0 | 3.18e-01 | 84.6% | 86.0% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 42.0 | 3.56e-01 | 100.0% | 78.4% |
| 2v50D07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.50 | 39.0 | 3.31e-01 | 88.5% | 49.5% |
| 3qtgA03 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.50 | 40.0 | 3.31e-01 | 100.0% | 64.3% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929258 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 54.0 | 4.51e-01 | 96.2% | 87.8% |
| 4611906 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.62 | 53.0 | 3.97e-01 | 100.0% | 79.3% |
| 4430800 | 304.11.1.2 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT | 0.61 | 42.0 | 3.79e-01 | 71.2% | 91.4% |
| 4927348 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.58 | 39.0 | 3.59e-01 | 71.2% | 93.3% |
| 3635090 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.58 | 49.0 | 3.17e-01 | 100.0% | 34.4% |
| 3948428 | 2008.1.1.122 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII-MboI | 0.57 | 46.0 | 3.49e-01 | 100.0% | 48.7% |
| 4123852 | 4002.1.1.4 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C | 0.57 | 43.0 | 3.03e-01 | 82.7% | 60.0% |
| 3965223 | 3121.1.1.5 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_3 | 0.57 | 45.0 | 4.08e-01 | 90.4% | 92.0% |
| 3859117 | 109.4.1.2231 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_Maestro, HEAT_Maestro_2, HEAT_MROH2B_1st, HEAT_MROH2B_C | 0.57 | 47.0 | 2.58e-01 | 98.1% | 10.3% |
| 3939951 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.84e-01 | 86.5% | 82.5% |
| 4379372 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.56 | 42.0 | 2.57e-01 | 80.8% | 15.6% |
| 4945483 | 2499.1.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 | 0.56 | 48.0 | 2.95e-01 | 100.0% | 36.2% |
| 3784109 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.55 | 47.0 | 3.67e-01 | 100.0% | 86.7% |
| 3337346 | 2002.1.1.234 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 | 0.54 | 43.0 | 2.83e-01 | 90.4% | 19.2% |
| 3471098 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 41.0 | 2.87e-01 | 86.5% | 74.7% |
| 4410228 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.54 | 41.0 | 2.70e-01 | 88.5% | 71.3% |
| 3423396 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.53 | 38.0 | 3.21e-01 | 84.6% | 44.7% |
| 3251263 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.53 | 43.0 | 2.66e-01 | 96.2% | 80.2% |
| 5031343 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.53 | 45.0 | 3.80e-01 | 98.1% | 73.3% |
| 4974371 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.53 | 39.0 | 2.80e-01 | 88.5% | 27.3% |
| 5000789 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.53 | 37.0 | 3.04e-01 | 84.6% | 38.1% |
| 3371393 | 4266.2.1.1 ↗ | alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 | 0.53 | 44.0 | 3.08e-01 | 96.2% | 37.6% |
| 3798165 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 4.00e-01 | 100.0% | 83.6% |
| 3651664 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 42.0 | 2.59e-01 | 94.2% | 80.0% |
| 4041349 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.52 | 43.0 | 3.21e-01 | 100.0% | 87.7% |
| 3743769 | 109.4.1.146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load | 0.52 | 43.0 | 2.52e-01 | 98.1% | 12.9% |
| 3399292 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.52 | 38.0 | 3.07e-01 | 76.9% | 41.0% |
| 3699329 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.52 | 41.0 | 2.56e-01 | 90.4% | 67.0% |
| 3338842 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.51 | 41.0 | 2.59e-01 | 98.1% | 53.9% |
| 3473115 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.51 | 43.0 | 3.99e-01 | 92.3% | 96.9% |
| 5057127 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 2.74e-01 | 96.2% | 29.0% |
| 4027679 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 36.0 | 2.89e-01 | 86.5% | 37.1% |
| 3493279 | 10.12.1.44 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD | 0.50 | 39.0 | 2.95e-01 | 84.6% | 79.2% |
| 3790123 | 101.1.2.496 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_eIF2D | 0.50 | 36.0 | 3.15e-01 | 88.5% | 82.9% |