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NC_049808.1__YP_009900596.1__H1N72_gp56__00056
Bact-VirNC_049808.1__YP_009900596.1__H1N72_gp56__00056
Identity
- Accession:
- NC_049808 ↗
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Taxonomy
TaxID: 2656515
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 208-293_343-367
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vm6A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.68 | 49.0 | 5.52e-01 | 80.2% | 100.0% |
| 2dm9A00 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.65 | 44.0 | 4.36e-01 | 81.1% | 65.3% |
| 3cypB00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.64 | 49.0 | 4.66e-01 | 80.2% | 95.3% |
| 4efaE02 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.61 | 47.0 | 4.52e-01 | 82.0% | 76.0% |
| 2bx2L02 | 3.40.1260.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain | 0.61 | 43.0 | 4.34e-01 | 72.1% | 72.7% |
| 6vq6I01 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.61 | 46.0 | 4.74e-01 | 81.1% | 85.2% |
| 6cngA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.60 | 44.0 | 4.23e-01 | 76.6% | 69.5% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.60 | 45.0 | 4.82e-01 | 80.2% | 95.7% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 31.0 | 3.20e-01 | 83.8% | 52.8% |
| 2yv3A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 44.0 | 3.72e-01 | 82.0% | 97.9% |
| 3v5nB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 42.0 | 3.57e-01 | 79.3% | 67.4% |
| 3at0A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 44.0 | 3.92e-01 | 87.4% | 95.8% |
| 1r17A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 4.05e-01 | 88.3% | 97.5% |
| 4ceiB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 3.75e-01 | 85.6% | 76.7% |
| 6bogA05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 3.62e-01 | 87.4% | 88.5% |
| 3tz6A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 41.0 | 3.48e-01 | 82.0% | 98.0% |
| 3p12A01 | 3.40.1650.10 | Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain | 0.54 | 40.0 | 3.92e-01 | 90.1% | 70.2% |
| 4a5pB01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.54 | 37.0 | 3.59e-01 | 71.2% | 73.6% |
| 3irpX02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 4.07e-01 | 92.8% | 96.6% |
| 1hyuA04 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 37.0 | 3.98e-01 | 79.3% | 87.2% |
| 1z6nA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 39.0 | 3.43e-01 | 81.1% | 63.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4282818 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.69 | 49.0 | 4.67e-01 | 81.1% | 63.1% |
| 5049320 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.67 | 46.0 | 3.90e-01 | 80.2% | 42.2% |
| 4947957 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.66 | 53.0 | 3.78e-01 | 86.5% | 46.5% |
| 4412841 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.66 | 44.0 | 4.16e-01 | 80.2% | 56.3% |
| 5000614 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.63 | 45.0 | 4.33e-01 | 80.2% | 65.6% |
| 3164650 | 3617.1.1.1 ↗ | a+b three layers › Thioredoxin-like domain in RNase E › Thioredoxin-like domain in RNase E › Thioredoxin-like domain in RNase E › RNase_E_G_Thio | 0.62 | 43.0 | 4.45e-01 | 72.1% | 75.2% |
| 3199114 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.62 | 48.0 | 4.43e-01 | 81.1% | 71.4% |
| 5082861 | 298.3.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › SDH_beta | 0.62 | 48.0 | 4.72e-01 | 82.0% | 76.7% |
| 3277384 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.62 | 47.0 | 4.43e-01 | 82.0% | 75.0% |
| 3480520 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.61 | 48.0 | 4.54e-01 | 82.0% | 73.1% |
| 4054249 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.61 | 46.0 | 4.17e-01 | 81.1% | 59.4% |
| 4475546 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.61 | 47.0 | 4.31e-01 | 82.0% | 66.2% |
| 3738685 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.60 | 44.0 | 4.21e-01 | 81.1% | 63.7% |
| 4207189 | 5046.1.1.1 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B | 0.60 | 43.0 | 3.42e-01 | 82.0% | 36.1% |
| 3613300 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.60 | 46.0 | 4.39e-01 | 81.1% | 70.0% |
| 4038524 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.59 | 42.0 | 4.16e-01 | 81.1% | 69.2% |
| 3593767 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.58 | 45.0 | 4.27e-01 | 81.1% | 72.3% |
| 5048799 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.57 | 39.0 | 4.06e-01 | 70.3% | 84.0% |
| 4160415 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 39.0 | 4.16e-01 | 81.1% | 83.2% |
| 3724407 | 2485.2.1.0 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain | 0.56 | 39.0 | 3.95e-01 | 73.0% | 77.4% |
| 150347 | 298.1.1.5 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Semialdhyde_dhC | 0.56 | 44.0 | 3.64e-01 | 84.7% | 97.0% |
| 3199775 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 40.0 | 4.16e-01 | 81.1% | 83.0% |
| 4400002 | 298.1.1.5 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Semialdhyde_dhC | 0.55 | 43.0 | 3.60e-01 | 83.8% | 97.4% |
| 5083808 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.55 | 33.0 | 3.87e-01 | 71.2% | 92.9% |
| 3737841 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.55 | 37.0 | 3.98e-01 | 81.1% | 84.4% |
| 3539623 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.55 | 37.0 | 3.99e-01 | 81.1% | 82.1% |
| 3393827 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 38.0 | 4.03e-01 | 81.1% | 82.0% |
| 4987337 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 37.0 | 3.81e-01 | 78.4% | 73.3% |
| 4465353 | 3008.1.1.2 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DUF5915 | 0.53 | 37.0 | 4.00e-01 | 82.0% | 85.3% |
| 4094658 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 38.0 | 4.07e-01 | 82.0% | 88.4% |
| 5014406 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.53 | 32.0 | 3.67e-01 | 73.0% | 88.0% |
| 3221043 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 37.0 | 3.76e-01 | 73.0% | 88.2% |
| 2806794 | 11.1.5.27 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep | 0.53 | 43.0 | 4.12e-01 | 91.0% | 97.0% |
| 11286 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 37.0 | 3.89e-01 | 79.3% | 80.4% |
| 3625418 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 37.0 | 3.92e-01 | 81.1% | 85.3% |
| 3703622 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.52 | 45.0 | 2.86e-01 | 100.0% | 46.0% |
| 5055166 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.52 | 32.0 | 3.76e-01 | 72.1% | 95.7% |
| 5078437 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 39.0 | 3.82e-01 | 78.4% | 82.5% |
| 4572718 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.52 | 39.0 | 3.00e-01 | 81.1% | 56.1% |
| 5069915 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 39.0 | 3.91e-01 | 81.1% | 81.7% |
| 3830098 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.52 | 47.0 | 3.05e-01 | 100.0% | 77.3% |
| 4078242 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.52 | 37.0 | 3.85e-01 | 81.1% | 82.0% |
| 3206346 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.51 | 38.0 | 3.40e-01 | 78.4% | 56.1% |
| 3271747 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 38.0 | 3.73e-01 | 81.1% | 75.2% |
| 3744882 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 4.11e-01 | 90.1% | 96.5% |