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NC_049811.1__YP_009900750.1__H1N75_gp32__00032

Bact-Vir

Identity

Accession:: NC_049811 ↗
Kingdom:: phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vedamuthuvirus› Lactococcus_phage_62503

TaxID: 1868853

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69

PDB

Domain cluster: representative

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3zh9B02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.61	44.0	4.42e-01	89.6%	74.3%
1ztdA00	1.10.1520.20	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III	0.61	44.0	3.73e-01	80.6%	67.2%
3d6kA01	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.58	42.0	3.29e-01	79.1%	59.0%
4ikbA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.58	47.0	3.88e-01	92.5%	87.6%
3kyiA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.57	49.0	4.00e-01	98.5%	60.2%
2egvA02	3.40.1280.10	Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain	0.55	42.0	3.21e-01	82.1%	92.0%
5ywwA01	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.55	39.0	3.32e-01	74.6%	48.7%
6dx5A00	3.90.70.80	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A ›	0.54	40.0	3.07e-01	82.1%	55.6%
3e9sA02	1.10.8.1190	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain	0.53	38.0	3.21e-01	77.6%	49.2%
2vlaA03	1.10.10.2090	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.52	42.0	3.61e-01	98.5%	52.5%
2h5eA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	39.0	2.90e-01	82.1%	51.3%
3qpbF00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.52	39.0	2.70e-01	82.1%	64.5%
2k8oA00	1.20.5.2120	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.52	36.0	3.82e-01	86.6%	83.3%
4cpdC01	3.90.180.10	Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain	0.52	43.0	3.14e-01	98.5%	35.2%
2mw2A00	1.20.1280.40	Mainly Alpha › Up-down Bundle › Monooxygenase › HHA	0.51	38.0	3.81e-01	86.6%	77.6%
3rrkA02	1.20.1460.20	Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 ›	0.50	39.0	3.09e-01	89.6%	74.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5000777	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.62	46.0	4.05e-01	77.6%	85.1%
4664276	589.1.2.1 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C	0.60	44.0	3.14e-01	77.6%	70.8%
3623893	367.1.1.0 ↗	few secondary structure elements › Insulin-like › Insulin-like › Insulin-like	0.56	47.0	4.54e-01	92.5%	84.0%
3437842	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.56	42.0	3.92e-01	85.1%	64.7%
4015710	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.55	41.0	3.83e-01	80.6%	63.5%
3760745	217.1.1.0 ↗	a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain	0.54	40.0	2.36e-01	79.1%	13.7%
None	—		0.54	41.0	2.86e-01	89.6%	22.9%
184727	3495.1.1.1 ↗	alpha bundles › Integrin alpha-L cytoplasmic domain › Integrin alpha-L cytoplasmic domain › Integrin alpha-L cytoplasmic domain › Integrin_alpha	0.52	36.0	3.82e-01	86.6%	83.3%