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NC_049812.1__YP_009900790.1__H1N76_gp22__00022

Bact-Vir

NC_049812.1__YP_009900790.1__H1N76_gp22__00022

Identity

Accession:
NC_049812 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vedamuthuvirus› Lactococcus_phage_P1045

TaxID: 2662293

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-84
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 50.0 4.11e-01 100.0% 97.4%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.58 36.0 3.39e-01 89.7% 49.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 4.00e-01 89.7% 70.2%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 44.0 3.70e-01 84.6% 73.3%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.55 41.0 2.65e-01 82.1% 81.2%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 47.0 4.18e-01 98.7% 75.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 4.23e-01 82.1% 100.0%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.66e-01 83.3% 63.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.24e-01 97.4% 84.9%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 36.0 3.98e-01 76.9% 95.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 4.24e-01 97.4% 94.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.51 40.0 3.23e-01 85.9% 54.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.50e-01 83.3% 66.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.32e-01 100.0% 52.9%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 38.0 3.19e-01 82.1% 91.5%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 32.0 3.20e-01 74.4% 61.7%
1vkwA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 37.0 3.27e-01 80.8% 73.6%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 42.0 5.07e-01 87.2% 100.0%
3934851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 50.0 4.61e-01 83.3% 85.0%
3681410 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 40.0 3.78e-01 76.9% 51.6%
3537588 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.62 54.0 4.23e-01 98.7% 68.6%
3410208 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.62 54.0 4.25e-01 98.7% 70.0%
3648040 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.62 54.0 4.24e-01 100.0% 71.8%
3258204 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.62 53.0 4.21e-01 98.7% 73.5%
3699576 220.1.1.230 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.61 51.0 4.32e-01 93.6% 87.4%
3515884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 49.0 4.29e-01 89.7% 78.3%
3910607 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 46.0 4.98e-01 83.3% 98.4%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 45.0 4.08e-01 84.6% 70.9%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 39.0 4.18e-01 84.6% 81.5%
4024411 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 36.0 4.14e-01 82.1% 89.1%
3717655 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.58 49.0 4.57e-01 94.9% 82.0%
2387800 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 49.0 4.02e-01 96.2% 98.7%
222386 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.58 50.0 4.11e-01 100.0% 97.4%
3718039 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.74e-01 96.2% 59.4%
143791 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.56 37.0 3.31e-01 92.3% 45.4%
3620045 883.1.1.6 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.56 45.0 3.70e-01 92.3% 74.8%
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.66e-01 92.3% 100.0%
3902975 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 39.0 4.36e-01 75.6% 100.0%
3568625 883.1.1.6 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.54 45.0 3.76e-01 94.9% 78.6%
3509385 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.54 42.0 3.45e-01 83.3% 62.9%
4990314 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.54 43.0 3.66e-01 91.0% 82.1%
4025081 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.69e-01 94.9% 58.0%
3743129 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 43.0 4.01e-01 93.6% 81.0%
3645309 4099.1.1.27 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.53 39.0 3.73e-01 79.5% 87.2%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 38.0 4.24e-01 83.3% 100.0%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.52 40.0 4.05e-01 84.6% 83.7%
184887 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.52 32.0 3.90e-01 78.2% 100.0%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.52 42.0 3.62e-01 89.7% 73.6%
3704298 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.51 38.0 3.47e-01 83.3% 87.8%
3666605 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.51 43.0 3.37e-01 96.2% 63.7%
3480351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.33e-01 96.2% 97.3%
3688114 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.50 42.0 2.61e-01 93.6% 85.5%
4561984 3264.1.1.0 ↗ 0.50 43.0 3.69e-01 97.4% 68.5%
4065996 3894.1.1.2 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.50 39.0 3.34e-01 85.9% 76.9%