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NC_049812.1__YP_009900812.1__H1N76_gp44__00044

Bact-Vir

NC_049812.1__YP_009900812.1__H1N76_gp44__00044

Identity

Accession:
NC_049812 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vedamuthuvirus› Lactococcus_phage_P1045

TaxID: 2662293

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-192
PDB
Domain cluster: rep: KR816341.1__AKQ06892.1__X__00033__D8-203
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 46.0 5.15e-01 96.1% 94.9%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.63 25.0 3.30e-01 89.0% 64.3%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 52.0 5.50e-01 95.6% 100.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.61 30.0 3.93e-01 85.1% 86.0%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 50.0 5.28e-01 94.5% 96.2%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.61 50.0 5.40e-01 93.9% 100.0%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 35.0 3.88e-01 98.3% 68.7%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.60 44.0 4.70e-01 88.4% 87.2%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 28.0 3.65e-01 94.5% 86.5%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 24.0 3.23e-01 84.0% 75.9%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 27.0 3.50e-01 97.2% 88.0%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 26.0 3.47e-01 97.2% 89.9%
3zh8C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 25.0 3.05e-01 86.2% 66.1%
4bwpB01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 28.0 2.51e-01 97.8% 35.2%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 25.0 3.23e-01 93.4% 83.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943316 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 66.0 7.01e-01 97.2% 94.4%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 66.0 7.10e-01 98.9% 96.8%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.81 56.0 4.82e-01 99.4% 47.0%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.78 58.0 6.47e-01 100.0% 95.9%
2642579 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.77 55.0 6.36e-01 97.8% 100.0%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.77 50.0 5.85e-01 96.7% 92.1%
4873215 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.76 57.0 6.37e-01 100.0% 98.6%
3964955 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 64.0 6.82e-01 96.1% 99.4%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.76 57.0 6.36e-01 100.0% 97.9%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 53.0 6.21e-01 96.7% 99.2%
2471637 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.75 58.0 6.40e-01 100.0% 97.3%
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.75 59.0 6.40e-01 100.0% 95.5%
3590380 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 62.0 6.23e-01 98.3% 86.7%
4954552 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.74 63.0 6.70e-01 99.4% 100.0%
3502370 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.74 58.0 6.21e-01 97.8% 92.5%
3941539 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.74 43.0 5.57e-01 85.1% 100.0%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.72 58.0 6.25e-01 100.0% 98.7%
4995819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 57.0 6.21e-01 96.1% 100.0%
3981654 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.71 43.0 5.37e-01 85.1% 98.2%
3942828 1.1.13.39 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.71 54.0 5.94e-01 99.4% 97.9%
4030848 1.1.13.52 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_1 0.69 55.0 5.82e-01 96.1% 92.0%
3942090 1.1.5.77 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube 0.68 55.0 5.77e-01 96.7% 92.1%
2387782 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 53.0 5.54e-01 96.7% 87.5%
4034209 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.65 47.0 5.41e-01 87.3% 100.0%
3967199 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 34.0 4.26e-01 86.2% 85.7%
1563850 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.61 50.0 5.28e-01 94.5% 96.2%
3943681 1.1.13.47 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.60 47.0 5.14e-01 90.6% 99.3%
3580020 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 46.0 4.52e-01 95.0% 83.1%
4943559 304.16.1.0 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like 0.54 24.0 3.22e-01 79.6% 78.7%
4883912 4028.1.1.1 ↗ beta barrels › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Catalase 0.51 22.0 2.89e-01 90.1% 70.3%
3547494 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 26.0 3.17e-01 84.0% 73.3%
3460834 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 25.0 2.88e-01 100.0% 60.0%
D2 high residues 203-280
PDB
Domain cluster: rep: NC_028805.1__YP_009199102.1__AVV11_gp150__00041__D695-776
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF02368.25 best Big_2 64.7 8.40e-18 98.7% 89.9%
PF26918.1 Ig_Eae 35.3 1.40e-08 64.1% 68.6%
PF22359.3 Big-like 40.7 3.10e-10 61.5% 95.8%