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NC_049820.1__YP_009901398.1__H1N84_gp08__00008

Bact-Vir

Identity

Accession:: NC_049820 ↗
Kingdom:: phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Hanrivervirus› Shigella_phage_2019SD1

TaxID: 2848074

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-67

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13262.12 best	DUF4054	35.2	1.70e-08	86.7%	41.9%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2icwG02	1.10.10.530	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2	0.71	47.0	4.10e-01	71.7%	46.1%
1tfeA02	1.10.286.20	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 ›	0.64	45.0	4.88e-01	75.0%	100.0%
4wz9A04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.62	42.0	2.67e-01	70.0%	14.1%
2hwjA02	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.62	50.0	5.03e-01	96.7%	98.4%
2mqaA00	1.10.274.60	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain	0.60	50.0	4.12e-01	100.0%	49.6%
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.60	41.0	3.84e-01	73.3%	61.5%
1gvfB00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.58	48.0	3.25e-01	98.3%	87.3%
2p0tA01	1.10.60.30	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains	0.58	39.0	3.70e-01	70.0%	81.6%
7odyC01	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.57	40.0	3.60e-01	76.7%	55.4%
7oiyA01	3.90.70.130	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A ›	0.57	44.0	3.04e-01	90.0%	33.6%
4bkxA01	4.10.1240.50	Few Secondary Structures › Irregular › Hormone receptor fold ›	0.55	46.0	3.80e-01	96.7%	52.2%
4dkcB00	1.20.1250.80	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34	0.55	44.0	3.23e-01	88.3%	80.0%
1z21A00	1.10.10.1000	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain	0.54	36.0	3.14e-01	75.0%	42.7%
4pypA00	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.54	42.0	2.55e-01	88.3%	19.5%
2yxhA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.52	38.0	3.15e-01	78.3%	48.7%
4i9oA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.50	40.0	3.85e-01	100.0%	84.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2770307	3788.1.1.1 ↗	alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR	0.77	64.0	5.48e-01	91.7%	62.8%
3281755	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.73	58.0	5.87e-01	91.7%	88.3%
3317025	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.59	41.0	3.11e-01	75.0%	43.9%
5061320	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.55	45.0	4.14e-01	91.7%	71.2%
3198528	130.1.1.16 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1	0.55	37.0	3.85e-01	71.7%	100.0%
5065029	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.54	39.0	2.96e-01	76.7%	98.5%
4990623	6155.1.1.0 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter	0.52	43.0	4.15e-01	91.7%	91.4%
3628125	632.15.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN)	0.52	44.0	4.12e-01	96.7%	84.0%
5029911	604.3.1.0 ↗	alpha bundles › Spectrin repeat-like › BAG domain › BAG domain	0.52	36.0	3.63e-01	73.3%	76.3%

D2 high residues 81-142

PDB

Domain cluster: rep: NC_049820.1__YP_009901398.1__H1N84_gp08__00008__D8-67

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13262.12 best	DUF4054	35.7	1.10e-08	87.1%	42.9%