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NC_049823.1__YP_009901667.1__H1N87_gp36__00036

Bact-Vir

NC_049823.1__YP_009901667.1__H1N87_gp36__00036

Identity

Accession:
NC_049823 ↗
Kingdom:
phage

Quality

58.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Hanrivervirus› Escherichia_phage_herni

TaxID: 2696404

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-94
PDB
D2 high residues 131-192
PDB
Domain cluster: rep: MZ501080.1__QXV80797.1__bas02_0031__00031__D7-65
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 39.0 3.30e-01 72.6% 66.3%
2yrmA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 28.0 3.38e-01 72.6% 73.0%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 39.0 3.01e-01 75.8% 82.5%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 43.0 2.64e-01 90.3% 79.5%
1ceeB00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.52 30.0 3.11e-01 82.3% 59.3%
2y9wC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 3.19e-01 88.7% 97.1%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 37.0 3.07e-01 83.9% 85.6%
3fcrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 36.0 2.68e-01 79.0% 48.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4880562 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.62 55.0 3.29e-01 100.0% 18.2%
4999337 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.57 45.0 3.36e-01 85.5% 88.4%
4334851 3820.1.1.1 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI 0.57 46.0 3.45e-01 90.3% 92.3%
4977429 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.56 44.0 3.41e-01 85.5% 97.1%
3944867 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 45.0 3.28e-01 100.0% 86.5%
3523886 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 45.0 4.11e-01 96.8% 70.5%
5011606 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.54 45.0 3.25e-01 93.5% 83.1%
3312039 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 34.0 3.66e-01 91.9% 75.5%
3761453 633.3.1.1 ↗ alpha bundles › Bromodomain-like › Mob1/phocein › Mob1/phocein › Mob1_phocein 0.53 40.0 2.91e-01 82.3% 95.9%
4998819 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.51 39.0 3.18e-01 85.5% 99.2%
4999065 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.51 42.0 3.21e-01 93.5% 99.4%
D3 high residues 232-313
PDB