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NC_049850.1__YP_009904051.1__H1O16_gp118__00118
Bact-VirNC_049850.1__YP_009904051.1__H1O16_gp118__00118
Identity
- Accession:
- NC_049850 ↗
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Taxonomy
TaxID: 2530032
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-59
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o8pA00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.84 | 69.0 | 4.35e-01 | 100.0% | 19.2% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 67.0 | 5.19e-01 | 100.0% | 41.9% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.79 | 62.0 | 5.73e-01 | 100.0% | 67.8% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 67.0 | 4.33e-01 | 100.0% | 62.0% |
| 2pusA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 58.0 | 5.62e-01 | 100.0% | 75.5% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 61.0 | 4.42e-01 | 100.0% | 32.1% |
| 2lfrA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.75 | 62.0 | 4.85e-01 | 100.0% | 45.0% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 61.0 | 5.75e-01 | 95.7% | 94.8% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 63.0 | 5.01e-01 | 100.0% | 61.6% |
| 3b2eF00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 63.0 | 5.82e-01 | 100.0% | 75.8% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.74 | 63.0 | 4.17e-01 | 100.0% | 48.2% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 59.0 | 4.68e-01 | 100.0% | 41.7% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.74 | 63.0 | 6.20e-01 | 97.8% | 98.0% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 63.0 | 5.62e-01 | 100.0% | 70.1% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.71 | 61.0 | 5.26e-01 | 100.0% | 76.3% |
| 3dyjA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.71 | 60.0 | 4.15e-01 | 100.0% | 27.7% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.71 | 59.0 | 5.40e-01 | 100.0% | 70.8% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 61.0 | 5.32e-01 | 100.0% | 69.0% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 57.0 | 5.30e-01 | 97.8% | 73.8% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.69 | 58.0 | 5.00e-01 | 100.0% | 69.7% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 55.0 | 3.57e-01 | 95.7% | 20.3% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.67 | 55.0 | 4.85e-01 | 100.0% | 62.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 53.0 | 5.00e-01 | 100.0% | 75.8% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 52.0 | 4.52e-01 | 100.0% | 55.1% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 55.0 | 4.95e-01 | 97.8% | 67.2% |
| 3hgtA00 | 3.40.50.12360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 55.0 | 3.44e-01 | 100.0% | 17.5% |
| 2qv2A02 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.65 | 54.0 | 3.71e-01 | 93.5% | 27.3% |
| 4aifA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 53.0 | 3.94e-01 | 100.0% | 53.5% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.64 | 53.0 | 5.21e-01 | 100.0% | 96.2% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 48.0 | 4.20e-01 | 97.8% | 55.4% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 43.0 | 3.06e-01 | 76.1% | 75.0% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.53 | 41.0 | 3.15e-01 | 93.5% | 33.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2524047 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.84 | 75.0 | 5.03e-01 | 100.0% | 29.6% |
| 4000107 | 3567.1.1.122 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › BAR | 0.84 | 74.0 | 5.02e-01 | 100.0% | 28.7% |
| 4951260 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.83 | 74.0 | 5.17e-01 | 100.0% | 32.9% |
| 3519300 | 1147.1.1.1 ↗ | alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL | 0.83 | 71.0 | 5.26e-01 | 100.0% | 38.3% |
| 3794795 | 603.1.1.3 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE | 0.80 | 68.0 | 5.37e-01 | 100.0% | 47.0% |
| 3757999 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.80 | 70.0 | 4.23e-01 | 100.0% | 93.9% |
| 3192393 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.79 | 66.0 | 3.64e-01 | 97.8% | 7.2% |
| 4999337 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.79 | 65.0 | 4.55e-01 | 100.0% | 28.4% |
| 3346803 | 5076.2.1.10 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 | 0.79 | 66.0 | 4.02e-01 | 100.0% | 15.7% |
| 3714352 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.78 | 66.0 | 4.91e-01 | 100.0% | 37.5% |
| 3651038 | 192.29.1.221 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29520 | 0.78 | 66.0 | 4.83e-01 | 100.0% | 35.4% |
| 5032045 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.77 | 63.0 | 5.07e-01 | 100.0% | 45.0% |
| 3788161 | 109.4.1.1379 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30880 | 0.77 | 68.0 | 3.89e-01 | 100.0% | 12.0% |
| 4935546 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.77 | 63.0 | 4.67e-01 | 100.0% | 34.1% |
| 3224003 | 9001.1.1.3 ↗ | alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT | 0.77 | 63.0 | 5.41e-01 | 100.0% | 70.0% |
| 4407848 | 148.1.3.209 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE | 0.76 | 65.0 | 5.14e-01 | 100.0% | 48.0% |
| 3576943 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.75 | 64.0 | 3.97e-01 | 100.0% | 52.9% |
| 3348106 | 5076.2.1.10 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 | 0.75 | 62.0 | 3.90e-01 | 100.0% | 16.7% |
| 4977429 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.75 | 63.0 | 4.50e-01 | 100.0% | 32.1% |
| 3676043 | 5076.2.1.10 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 | 0.75 | 62.0 | 3.86e-01 | 100.0% | 17.2% |
| 5041863 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.75 | 60.0 | 4.60e-01 | 100.0% | 37.5% |
| 3719591 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.74 | 61.0 | 4.04e-01 | 100.0% | 32.1% |
| 5017725 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.74 | 62.0 | 4.11e-01 | 100.0% | 23.1% |
| 4572815 | 3812.1.1.4 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › GrpE | 0.74 | 62.0 | 6.09e-01 | 100.0% | 96.0% |
| 3494602 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 62.0 | 3.40e-01 | 100.0% | 5.7% |
| 5050698 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.73 | 60.0 | 4.51e-01 | 100.0% | 58.9% |
| 5051266 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 64.0 | 4.08e-01 | 100.0% | 20.4% |
| 3240265 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.73 | 63.0 | 3.77e-01 | 97.8% | 14.3% |
| 4978165 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.73 | 60.0 | 4.03e-01 | 100.0% | 23.0% |
| 4485576 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.72 | 60.0 | 3.72e-01 | 100.0% | 33.4% |
| 4977784 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 58.0 | 3.74e-01 | 100.0% | 18.7% |
| 4590389 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.72 | 60.0 | 4.27e-01 | 100.0% | 30.3% |
| 5005094 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.72 | 60.0 | 3.99e-01 | 100.0% | 23.1% |
| 4300120 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.71 | 60.0 | 5.73e-01 | 100.0% | 87.3% |
| 4595410 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.71 | 62.0 | 5.57e-01 | 100.0% | 72.3% |
| 4536765 | 605.1.1.108 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE | 0.71 | 60.0 | 4.79e-01 | 100.0% | 48.0% |
| 3702347 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.71 | 58.0 | 3.95e-01 | 100.0% | 24.6% |
| 4213046 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.71 | 59.0 | 5.40e-01 | 100.0% | 72.3% |
| 4667859 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.71 | 61.0 | 4.61e-01 | 100.0% | 47.8% |
| 3594586 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.71 | 61.0 | 4.86e-01 | 100.0% | 88.4% |
| 3472169 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.71 | 58.0 | 4.21e-01 | 100.0% | 29.7% |
| 4972401 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.71 | 57.0 | 3.82e-01 | 100.0% | 21.4% |
| 3349199 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.70 | 60.0 | 6.06e-01 | 100.0% | 100.0% |
| 4977369 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.69 | 57.0 | 3.67e-01 | 100.0% | 32.8% |
| 2914508 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.69 | 54.0 | 3.40e-01 | 95.7% | 19.7% |
| 4544002 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.68 | 53.0 | 5.21e-01 | 87.0% | 92.0% |
| 4959101 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.68 | 56.0 | 3.61e-01 | 100.0% | 34.3% |
| 3646011 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 56.0 | 5.03e-01 | 100.0% | 67.1% |
| 4999065 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.68 | 54.0 | 3.89e-01 | 100.0% | 29.0% |
| 4966687 | 192.3.1.1 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N | 0.66 | 55.0 | 4.60e-01 | 97.8% | 80.0% |
| 3955489 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.66 | 55.0 | 3.65e-01 | 100.0% | 32.4% |
| 4058512 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.63 | 54.0 | 3.48e-01 | 100.0% | 44.9% |