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NC_049851.1__YP_009904381.1__H1O17_gp003__00003
Bact-VirNC_049851.1__YP_009904381.1__H1O17_gp003__00003
Identity
- Accession:
- NC_049851 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
TaxID: 2530033
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-50
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7x4pA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.76 | 61.0 | 4.17e-01 | 100.0% | 26.1% |
| 6p8uA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 59.0 | 4.23e-01 | 100.0% | 47.9% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.69 | 56.0 | 3.93e-01 | 100.0% | 27.8% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.69 | 44.0 | 3.65e-01 | 71.7% | 35.7% |
| 2oaiA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.69 | 44.0 | 3.72e-01 | 73.9% | 37.5% |
| 2p4pA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.65 | 44.0 | 3.71e-01 | 73.9% | 98.8% |
| 3f2bA04 | 3.30.1900.20 | Alpha Beta › 2-Layer Sandwich › glyoxalase-related enzyme like fold › | 0.64 | 53.0 | 4.67e-01 | 100.0% | 97.3% |
| 3csvA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 47.0 | 3.98e-01 | 100.0% | 47.6% |
| 2gruA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.62 | 45.0 | 3.09e-01 | 82.6% | 89.3% |
| 3ipjA01 | 3.30.1360.60 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB | 0.62 | 51.0 | 4.41e-01 | 100.0% | 85.0% |
| 3oksA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 52.0 | 3.60e-01 | 100.0% | 42.6% |
| 1zswA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 51.0 | 3.51e-01 | 100.0% | 29.2% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 42.0 | 3.74e-01 | 71.7% | 51.5% |
| 2qa1A02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 2.88e-01 | 100.0% | 32.9% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.59 | 48.0 | 3.68e-01 | 97.8% | 38.7% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.59 | 41.0 | 2.38e-01 | 73.9% | 16.0% |
| 7vjvA01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.58 | 43.0 | 2.92e-01 | 84.8% | 76.8% |
| 1f7uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 2.74e-01 | 93.5% | 12.1% |
| 3getA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 47.0 | 3.91e-01 | 100.0% | 68.1% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 45.0 | 3.33e-01 | 100.0% | 29.9% |
| 3a7rA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 45.0 | 3.00e-01 | 100.0% | 21.8% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.58 | 44.0 | 3.80e-01 | 93.5% | 52.0% |
| 1o3sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.45e-01 | 100.0% | 49.3% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.56 | 46.0 | 3.63e-01 | 100.0% | 55.0% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 46.0 | 3.49e-01 | 97.8% | 38.1% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 41.0 | 3.20e-01 | 80.4% | 39.3% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 38.0 | 2.77e-01 | 100.0% | 24.6% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.32e-01 | 100.0% | 42.7% |
| 3dodB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 46.0 | 3.24e-01 | 100.0% | 47.6% |
| 1noyA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.55 | 37.0 | 2.66e-01 | 76.1% | 23.9% |
| 1mtpA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 37.0 | 3.10e-01 | 76.1% | 35.2% |
| 1dabA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.55 | 37.0 | 2.13e-01 | 71.7% | 6.5% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 45.0 | 3.75e-01 | 100.0% | 63.2% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.55 | 44.0 | 3.09e-01 | 93.5% | 31.8% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 36.0 | 3.58e-01 | 76.1% | 63.3% |
| 1yo8A02 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.55 | 42.0 | 4.01e-01 | 87.0% | 71.4% |
| 3i5tB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 43.0 | 3.14e-01 | 100.0% | 45.7% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.54 | 43.0 | 3.23e-01 | 100.0% | 32.1% |
| 3kf6A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 3.13e-01 | 91.3% | 77.2% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.54 | 39.0 | 3.15e-01 | 91.3% | 37.6% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.53 | 43.0 | 3.01e-01 | 97.8% | 77.3% |
| 2p1wA01 | 3.30.2430.10 | Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase | 0.53 | 40.0 | 2.80e-01 | 89.1% | 40.9% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 38.0 | 2.55e-01 | 91.3% | 16.4% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 35.0 | 3.03e-01 | 78.3% | 37.9% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.52 | 35.0 | 2.68e-01 | 71.7% | 37.8% |
| 2jvnA00 | 3.90.640.80 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.51 | 40.0 | 3.12e-01 | 100.0% | 61.1% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.61e-01 | 82.6% | 82.7% |
| 3ic9A03 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 38.0 | 3.08e-01 | 100.0% | 86.1% |
| 3kt7A01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.50 | 37.0 | 2.46e-01 | 89.1% | 89.4% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4081551 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.78 | 61.0 | 4.05e-01 | 100.0% | 22.2% |
| 3022648 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.74 | 58.0 | 3.91e-01 | 100.0% | 22.5% |
| 3760807 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.72 | 50.0 | 2.84e-01 | 73.9% | 85.7% |
| 3501815 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.70 | 48.0 | 4.33e-01 | 73.9% | 52.3% |
| 2561753 | 316.1.1.26 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS | 0.69 | 58.0 | 4.01e-01 | 100.0% | 40.6% |
| 3739664 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.69 | 51.0 | 4.64e-01 | 100.0% | 57.1% |
| 3507373 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.68 | 48.0 | 4.07e-01 | 73.9% | 45.3% |
| 3626212 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 46.0 | 3.23e-01 | 78.3% | 21.9% |
| 146331 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.63 | 46.0 | 4.50e-01 | 100.0% | 75.0% |
| 3282992 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.62 | 52.0 | 4.06e-01 | 97.8% | 83.3% |
| 3740252 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.62 | 51.0 | 3.97e-01 | 100.0% | 43.5% |
| 5058917 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.62 | 50.0 | 3.85e-01 | 100.0% | 37.6% |
| 4363149 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 48.0 | 2.59e-01 | 89.1% | 7.2% |
| 3436834 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 45.0 | 2.79e-01 | 84.8% | 13.3% |
| 5036173 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.60 | 45.0 | 3.01e-01 | 93.5% | 19.0% |
| 4977897 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 40.0 | 2.94e-01 | 71.7% | 23.7% |
| 3838435 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.59 | 44.0 | 3.59e-01 | 84.8% | 60.0% |
| 3395585 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.58 | 46.0 | 4.15e-01 | 89.1% | 96.9% |
| 5043126 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 46.0 | 4.22e-01 | 93.5% | 87.7% |
| 5025461 | 3347.1.1.0 ↗ | beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 | 0.58 | 39.0 | 3.43e-01 | 71.7% | 66.7% |
| 4956395 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.57 | 37.0 | 3.60e-01 | 71.7% | 52.7% |
| 4001239 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 38.0 | 3.08e-01 | 73.9% | 33.7% |
| 3896675 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.56 | 44.0 | 4.35e-01 | 97.8% | 82.0% |
| 3839627 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.56 | 45.0 | 3.33e-01 | 93.5% | 40.7% |
| 3255946 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 45.0 | 3.86e-01 | 93.5% | 77.5% |
| 150341 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.56 | 39.0 | 2.80e-01 | 78.3% | 72.5% |
| 3999192 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 37.0 | 3.18e-01 | 71.7% | 38.7% |
| 3586367 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.55 | 40.0 | 2.48e-01 | 91.3% | 10.9% |
| 3635583 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.55 | 44.0 | 2.88e-01 | 100.0% | 20.5% |
| 3871585 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.54 | 42.0 | 2.56e-01 | 97.8% | 30.1% |
| 4000212 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 2.60e-01 | 95.7% | 20.0% |
| 5057283 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.53 | 43.0 | 3.24e-01 | 100.0% | 88.1% |
| 5057424 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.53 | 45.0 | 2.95e-01 | 100.0% | 59.1% |
| 4944705 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 42.0 | 3.30e-01 | 100.0% | 85.8% |
| 4927204 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 33.0 | 2.78e-01 | 71.7% | 33.3% |
| 138326 | 101.1.8.2 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I | 0.52 | 44.0 | 3.25e-01 | 100.0% | 55.4% |
| 3178465 | 719.1.1.8 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF29965 | 0.51 | 39.0 | 3.15e-01 | 97.8% | 81.7% |
| 3704074 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.51 | 44.0 | 3.05e-01 | 100.0% | 27.9% |
| 3493599 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.51 | 36.0 | 2.65e-01 | 80.4% | 45.2% |
| 4977402 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 34.0 | 2.56e-01 | 71.7% | 22.1% |
| 4583417 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.51 | 39.0 | 3.52e-01 | 91.3% | 60.0% |
| 2532167 | 7086.1.1.0 ↗ | 0.51 | 36.0 | 3.09e-01 | 78.3% | 42.2% | |
| 5044666 | 101.1.8.2 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I | 0.50 | 42.0 | 3.00e-01 | 100.0% | 47.5% |
| 4200272 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.50 | 34.0 | 2.87e-01 | 71.7% | 71.1% |
| 3758651 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.50 | 40.0 | 2.80e-01 | 97.8% | 78.9% |
| 3282325 | 101.1.8.2 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I | 0.50 | 40.0 | 2.96e-01 | 100.0% | 49.0% |