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NC_049851.1__YP_009904486.1__H1O17_gp108__00108

Bact-Vir

NC_049851.1__YP_009904486.1__H1O17_gp108__00108

Identity

Accession:
NC_049851 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarumanvirus› Burkholderia_phage_BcepSauron

TaxID: 2530033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-114
PDB
Domain cluster: rep: Salt_Pond_R2_restored_H2O_MG_scaffold_5_prodigal-single.1__X__X__00183__D78-188
D2 high residues 122-204
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 47.0 4.29e-01 73.5% 98.2%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 45.0 4.29e-01 73.5% 92.8%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 39.0 4.66e-01 96.4% 98.1%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.63 43.0 4.27e-01 71.1% 95.5%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 44.0 3.89e-01 73.5% 92.5%
1bqbA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.62 49.0 4.16e-01 88.0% 74.3%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 43.0 4.09e-01 72.3% 95.9%
1yz4B01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 46.0 3.72e-01 79.5% 87.6%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 3.89e-01 72.3% 92.6%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 3.87e-01 73.5% 92.7%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 41.0 4.08e-01 72.3% 70.8%
5uh5D02 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.58 34.0 2.90e-01 89.2% 34.8%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 40.0 3.70e-01 75.9% 90.4%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 37.0 4.05e-01 96.4% 85.3%
2i6jA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 43.0 3.54e-01 85.5% 88.8%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.55 41.0 3.92e-01 84.3% 70.5%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 38.0 3.84e-01 78.3% 74.7%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3833652 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.70 49.0 5.16e-01 73.5% 84.0%
3834278 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.68 48.0 5.35e-01 74.7% 100.0%
3668677 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.68 50.0 5.42e-01 79.5% 98.6%
3505729 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 47.0 4.41e-01 72.3% 92.0%
3666716 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.66 50.0 5.10e-01 80.7% 85.0%
3701004 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.65 50.0 5.04e-01 83.1% 83.5%
3973899 5086.1.1.92 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE 0.64 55.0 4.70e-01 100.0% 91.0%
3214190 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 46.0 4.24e-01 75.9% 94.5%
3704864 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 44.0 3.92e-01 71.1% 78.3%
3792 603.1.1.6 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.64 45.0 4.29e-01 73.5% 92.8%
4013992 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.61 53.0 4.37e-01 100.0% 76.2%
3347936 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.61 31.0 3.34e-01 84.3% 54.1%
3212811 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.61 50.0 4.44e-01 95.2% 99.2%
3251599 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.26e-01 73.5% 100.0%
4485485 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 45.0 3.00e-01 88.0% 56.8%
4942316 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 49.0 3.73e-01 100.0% 87.8%
3262816 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.56 40.0 3.77e-01 83.1% 61.0%
3723174 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 38.0 3.98e-01 100.0% 80.0%
3279033 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 39.0 4.14e-01 75.9% 86.7%
5026112 3457.1.1.0 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease 0.54 43.0 3.27e-01 90.4% 36.4%
4042824 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.53 37.0 3.81e-01 100.0% 76.2%
3705404 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.53 45.0 3.23e-01 96.4% 99.6%
4052574 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 36.0 3.12e-01 95.2% 45.2%
3933048 4992.1.1.12 ↗ extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.51 42.0 3.94e-01 100.0% 74.0%