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NC_049851.1__YP_009904503.1__H1O17_gp125__00125

Bact-Vir

Identity

Accession:: NC_049851 ↗
Kingdom:: phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarumanvirus› Burkholderia_phage_BcepSauron

TaxID: 2530033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 207-293

PDB

Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13455.13 best	MUG113	25.8	1.70e-05	81.6%	72.6%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ja1B00	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.64	40.0	4.44e-01	100.0%	83.3%
4faoC00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.61	35.0	3.79e-01	74.7%	66.7%
2ebmA00	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.60	34.0	3.00e-01	81.6%	37.5%
1ycoA00	3.40.718.10	Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase	0.60	47.0	3.32e-01	85.1%	61.2%
1konA02	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.59	48.0	4.83e-01	100.0%	85.6%
3thpA02	2.60.120.1520	Mainly Beta › Sandwich › Jelly Rolls ›	0.58	40.0	3.32e-01	81.6%	40.8%
7vxrA01	3.40.800.10	Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain	0.55	40.0	3.83e-01	74.7%	85.7%
1khbA03	3.90.228.20	Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 ›	0.55	49.0	3.48e-01	100.0%	71.4%
1mw7A02	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.53	46.0	4.69e-01	98.9%	95.4%
3liuA01	2.60.40.3160	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	35.0	3.25e-01	82.8%	51.7%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4016088	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.81	74.0	6.92e-01	100.0%	81.0%
3989300	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.70	63.0	5.77e-01	100.0%	77.3%
4278307	71.1.1.2 ↗	beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA	0.61	45.0	3.44e-01	75.9%	85.8%
3942981	2484.1.1.269 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_4	0.58	44.0	2.93e-01	81.6%	58.9%
3250324	2.1.1.69 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2	0.58	43.0	3.82e-01	80.5%	97.0%
3226369	2004.1.2.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP	0.57	51.0	3.52e-01	100.0%	75.2%
3413058	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.56	38.0	3.83e-01	71.3%	68.9%
3818615	5.1.3.118 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3	0.55	38.0	2.57e-01	71.3%	99.7%
4487057	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.55	48.0	4.79e-01	100.0%	92.2%
4038267	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.54	48.0	4.65e-01	100.0%	84.8%
5047756	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.54	39.0	3.15e-01	75.9%	94.1%
4633704	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.53	47.0	4.65e-01	97.7%	92.2%
4796557	4012.3.1.0 ↗	a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9	0.52	35.0	3.95e-01	81.6%	98.4%
327605	233.1.1.8 ↗	a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1	0.51	35.0	2.92e-01	72.4%	86.3%
3957598	2004.1.2.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP	0.51	44.0	3.29e-01	96.6%	77.0%
4592879	633.23.1.4 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2	0.50	35.0	2.66e-01	73.6%	74.8%

D2 medium residues 8-45

PDB

Domain cluster: rep: NC_049851.1__YP_009904503.1__H1O17_gp125__00125__D104-141

D3 medium residues 56-93

PDB

Domain cluster: rep: MW980069.1__QXV74495.1__X__00002__D61-98

D4 medium residues 104-141

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kxfB02	1.10.1900.50	Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein ›	0.61	42.0	3.73e-01	71.1%	47.4%
4g3vA00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.56	42.0	2.97e-01	100.0%	93.8%
2pusA05	1.10.1740.80	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A ›	0.55	38.0	3.20e-01	78.9%	51.2%
1xl7A01	1.10.275.20	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase	0.54	37.0	2.97e-01	84.2%	53.4%
3besR03	6.10.140.1480	Special › Helix non-globular › Helix Hairpins ›	0.54	37.0	3.33e-01	73.7%	57.1%
4hkaA02	1.10.287.3810	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	37.0	3.53e-01	81.6%	68.6%

D5 medium residues 154-191

PDB

Domain cluster: rep: MW980069.1__QXV74495.1__X__00002__D61-98