←Back to structures

NC_049851.1__YP_009904556.1__H1O17_gp178__00178

Bact-Vir

NC_049851.1__YP_009904556.1__H1O17_gp178__00178

Identity

Accession:
NC_049851 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarumanvirus› Burkholderia_phage_BcepSauron

TaxID: 2530033

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-84
PDB
D2 medium residues 92-139
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 50.0 3.09e-01 93.8% 39.2%
1md6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 51.0 3.75e-01 100.0% 98.1%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.62 50.0 5.21e-01 93.8% 100.0%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.59 43.0 3.97e-01 79.2% 92.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.61e-01 95.8% 80.0%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 45.0 3.16e-01 91.7% 58.5%
1iybA00 3.90.730.10 Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like 0.55 45.0 3.09e-01 100.0% 84.1%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.55 45.0 4.17e-01 100.0% 89.4%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.45e-01 91.7% 47.7%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.55 37.0 2.45e-01 70.8% 54.1%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.61e-01 100.0% 83.8%
3wwvA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.62e-01 81.2% 85.9%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.75e-01 97.9% 32.8%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 3.04e-01 93.8% 31.4%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.53 42.0 2.97e-01 100.0% 74.0%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 35.0 2.53e-01 70.8% 90.5%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.52 44.0 2.97e-01 100.0% 37.6%
1c16A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 40.0 2.99e-01 95.8% 95.1%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 3.48e-01 100.0% 58.2%
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.52 41.0 3.19e-01 100.0% 40.6%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.29e-01 89.6% 58.5%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.66e-01 100.0% 35.2%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.71e-01 97.9% 83.3%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.51 43.0 3.07e-01 100.0% 31.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3400388 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.67 46.0 4.24e-01 72.9% 64.6%
3409554 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.62 53.0 4.25e-01 97.9% 95.8%
3908411 59.1.1.4 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Ctf8 0.60 40.0 3.16e-01 70.8% 71.8%
4575824 2.8.1.2 ↗ beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.58 39.0 3.60e-01 70.8% 100.0%
3586981 3678.1.1.0 ↗ alpha arrays › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain › Pilus-presented adhesin helical insertion domain 0.57 39.0 2.79e-01 72.9% 95.5%
3972267 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 48.0 2.97e-01 100.0% 40.6%
4995271 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.57 39.0 3.07e-01 72.9% 49.1%
3276452 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.57 43.0 2.52e-01 85.4% 12.3%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 49.0 3.99e-01 97.9% 77.8%
5043213 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 40.0 2.72e-01 79.2% 90.0%
3997517 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 3.87e-01 95.8% 81.4%
3648535 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.53 36.0 2.72e-01 79.2% 59.4%
3894189 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.51 42.0 2.96e-01 100.0% 64.4%
3903925 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 41.0 2.86e-01 97.9% 46.7%
4006496 10.12.1.116 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30441 0.50 33.0 2.54e-01 97.9% 25.2%