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NC_049851.1__YP_009904622.1__H1O17_gp244__00244
Bact-VirNC_049851.1__YP_009904622.1__H1O17_gp244__00244
Identity
- Accession:
- NC_049851 ↗
- Kingdom:
- phage
Quality
71.9
mean pLDDT
Taxonomy
TaxID: 2530033
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 102-201
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.78 | 47.0 | 4.70e-01 | 71.0% | 58.8% |
| 2mjmA00 | 1.10.533.20 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › | 0.51 | 36.0 | 3.68e-01 | 86.0% | 73.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010051 | 1075.1.1.3 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 | 0.78 | 55.0 | 4.01e-01 | 73.0% | 65.4% |
| 4993799 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.75 | 50.0 | 4.89e-01 | 78.0% | 62.4% |
| 5010020 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.73 | 56.0 | 5.32e-01 | 80.0% | 92.2% |
| 5025363 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.66 | 51.0 | 4.68e-01 | 87.0% | 63.1% |
| 3651379 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 46.0 | 4.09e-01 | 74.0% | 77.1% |
| 5050567 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.64 | 50.0 | 4.26e-01 | 83.0% | 93.7% |
| 4506168 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.63 | 50.0 | 4.70e-01 | 87.0% | 72.0% |
| 5049467 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.63 | 52.0 | 4.42e-01 | 89.0% | 91.3% |
| 3936773 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.62 | 53.0 | 3.92e-01 | 94.0% | 97.4% |
| 3389581 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.62 | 48.0 | 3.61e-01 | 84.0% | 98.4% |
| 5074535 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.61 | 44.0 | 4.15e-01 | 75.0% | 62.5% |
| 3461533 | 3755.3.1.610 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › UPF0114 | 0.61 | 45.0 | 4.20e-01 | 78.0% | 64.8% |
| 4166693 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.58 | 51.0 | 4.26e-01 | 100.0% | 71.9% |
| 3927398 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 39.0 | 3.84e-01 | 70.0% | 65.7% |
| 3870423 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.56 | 43.0 | 3.48e-01 | 83.0% | 100.0% |
| 3961140 | 3236.1.1.7 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF_like | 0.56 | 45.0 | 3.48e-01 | 90.0% | 60.8% |