←Back to structures

NC_049851.1__YP_009904806.1__H1O17_gp428__00428

Bact-Vir

NC_049851.1__YP_009904806.1__H1O17_gp428__00428

Identity

Accession:
NC_049851 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarumanvirus› Burkholderia_phage_BcepSauron

TaxID: 2530033

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-125
PDB
Domain cluster: rep: KP881232.1__AKE44837.1__Sm_phiM9_210__00206__D3-129
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 49.0 5.62e-01 77.5% 75.8%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 51.0 6.36e-01 78.3% 97.3%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 49.0 6.00e-01 76.7% 92.3%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 47.0 5.66e-01 95.0% 86.6%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 51.0 5.60e-01 90.8% 81.6%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.87e-01 90.8% 87.5%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.76 44.0 5.67e-01 75.0% 100.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.80e-01 94.2% 85.4%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 4.97e-01 92.5% 61.5%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.29e-01 93.3% 79.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.68e-01 95.8% 85.8%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 5.57e-01 94.2% 76.7%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 5.80e-01 96.7% 100.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 5.49e-01 95.0% 80.0%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.72 48.0 5.64e-01 95.0% 100.0%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 5.09e-01 95.0% 79.6%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 5.49e-01 93.3% 88.3%
2ns0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 5.57e-01 78.3% 98.8%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 5.15e-01 81.7% 91.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.85e-01 95.8% 76.7%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.61 42.0 4.68e-01 98.3% 91.5%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 31.0 3.90e-01 75.8% 84.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.58 24.0 3.44e-01 71.7% 80.7%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 39.0 4.41e-01 98.3% 91.4%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.91e-01 86.7% 70.4%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.55 35.0 3.57e-01 78.3% 65.5%
3g87A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 28.0 3.52e-01 70.8% 88.1%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 38.0 3.73e-01 93.3% 71.1%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.51 39.0 3.43e-01 98.3% 53.2%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 32.0 3.40e-01 83.3% 72.8%
1kvnA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.50 33.0 3.57e-01 85.8% 77.9%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4558680 101.1.2.807 ↗ alpha arrays › HTH › HTH › winged helix domain › MC6 0.83 48.0 5.84e-01 77.5% 87.5%
4945595 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 48.0 4.99e-01 75.0% 62.6%
3250041 101.1.2.525 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.80 54.0 4.29e-01 79.2% 36.4%
4029192 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.80 51.0 3.48e-01 77.5% 20.5%
3989819 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.80 49.0 6.14e-01 78.3% 100.0%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 61.0 6.03e-01 91.7% 78.4%
3639498 101.1.2.722 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6581, PF28722 0.77 54.0 3.63e-01 77.5% 21.0%
3200375 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.77 54.0 4.04e-01 77.5% 31.6%
4971999 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 59.0 5.90e-01 91.7% 78.4%
3586609 101.1.2.278 ↗ alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.76 53.0 5.38e-01 100.0% 72.3%
3250067 101.1.2.271 ↗ alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.76 48.0 5.22e-01 76.7% 76.0%
4980261 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 52.0 5.60e-01 93.3% 81.0%
3727442 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.76 55.0 5.41e-01 78.3% 71.2%
4941839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 49.0 4.57e-01 77.5% 54.5%
5082704 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.75 47.0 3.92e-01 76.7% 38.5%
5000735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 46.0 3.99e-01 76.7% 42.3%
3727445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 51.0 5.39e-01 97.5% 80.0%
3347816 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.73 51.0 5.26e-01 78.3% 74.8%
3467403 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.73 48.0 5.73e-01 92.5% 100.0%
3738674 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.73 53.0 5.54e-01 77.5% 81.8%
4968526 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.73 49.0 5.62e-01 80.0% 92.2%
4969210 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.72 51.0 5.68e-01 83.3% 91.6%
3821254 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.72 53.0 5.26e-01 91.7% 72.8%
5082509 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.72 50.0 4.93e-01 87.5% 66.2%
4029555 101.1.2.278 ↗ alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.72 51.0 5.29e-01 98.3% 76.5%
3383835 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.72 51.0 5.14e-01 94.2% 72.5%
4936984 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 48.0 4.92e-01 79.2% 69.5%
3831199 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 48.0 5.07e-01 77.5% 77.1%
4947850 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 6.01e-01 93.3% 95.2%
5082698 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.71 41.0 4.70e-01 76.7% 75.6%
4953109 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.71 52.0 5.72e-01 84.2% 94.7%
4972556 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 5.60e-01 75.0% 97.6%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.70 54.0 4.99e-01 80.0% 71.3%
3181301 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.70 51.0 4.83e-01 80.0% 62.8%
3853184 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.70 54.0 4.90e-01 80.0% 71.6%
3625937 101.1.2.216 ↗ alpha arrays › HTH › HTH › winged helix domain › CED4_WHD 0.70 52.0 4.83e-01 90.0% 62.0%
4994660 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.74e-01 93.3% 90.0%
5057571 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.70 48.0 5.45e-01 84.2% 94.4%
3580866 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.69 54.0 5.45e-01 81.7% 85.0%
3738672 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 5.66e-01 100.0% 100.0%
4940742 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.69 46.0 5.39e-01 84.2% 96.5%
5067132 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 5.08e-01 83.3% 77.4%
3597257 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 5.38e-01 95.0% 100.0%
4929672 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.84e-01 93.3% 90.0%
5014314 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.68 47.0 5.29e-01 80.8% 93.3%
4508433 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.68 44.0 3.06e-01 93.3% 20.5%
4962051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 4.80e-01 89.2% 67.4%
4950787 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.68 47.0 5.25e-01 85.0% 90.5%
3532208 7558.1.1.10 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.68 51.0 4.42e-01 98.3% 51.4%
3632793 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.68 49.0 5.38e-01 95.8% 90.0%
3167816 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 5.45e-01 100.0% 98.9%
4025929 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.40e-01 90.8% 87.0%
3922669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 5.39e-01 99.2% 93.3%
3317316 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.66 50.0 4.82e-01 84.2% 69.6%
4955510 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.79e-01 84.2% 66.7%
3637467 101.1.2.74 ↗ alpha arrays › HTH › HTH › winged helix domain › Cnd2 0.65 48.0 5.15e-01 78.3% 89.3%
4993772 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.65 49.0 5.16e-01 87.5% 89.5%
3187043 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 5.37e-01 81.7% 100.0%
3738271 101.1.2.166 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.65 55.0 5.71e-01 99.2% 98.2%
3713148 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 42.0 4.62e-01 89.2% 82.1%
3271616 101.1.2.147 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.64 52.0 5.12e-01 93.3% 80.8%
3685188 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.64 58.0 5.05e-01 97.5% 74.3%
4995231 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.64 39.0 4.45e-01 96.7% 81.1%
3637726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.73e-01 75.0% 90.0%
3323745 101.1.2.462 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.62 56.0 4.56e-01 100.0% 84.8%
3655782 101.1.2.598 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.62 51.0 3.70e-01 86.7% 43.7%
3781035 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 5.06e-01 80.8% 97.9%
3829353 101.1.2.641 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.61 55.0 3.61e-01 100.0% 37.1%
3255511 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.61 51.0 4.28e-01 87.5% 88.9%
3394822 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 50.0 4.20e-01 87.5% 85.1%
3640260 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 49.0 4.07e-01 86.7% 82.0%
3187460 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.60 49.0 4.21e-01 86.7% 87.6%
3743779 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.60 49.0 4.49e-01 86.7% 80.0%
4012739 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.74e-01 86.7% 83.0%
None — 0.59 50.0 4.22e-01 87.5% 89.7%
3692895 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 49.0 3.91e-01 87.5% 73.9%
3783244 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 49.0 3.90e-01 86.7% 73.3%
5044477 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.66e-01 79.2% 90.0%
3718689 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.58 52.0 4.87e-01 96.7% 92.4%
3938245 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 49.0 4.01e-01 90.8% 84.1%
3276654 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.56 47.0 3.51e-01 90.0% 84.4%
3811740 2003.1.5.14 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.52 35.0 2.80e-01 74.2% 33.5%