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NC_049853.1__YP_009904966.1__H1N90_gp62__00062

Bact-Vir

NC_049853.1__YP_009904966.1__H1N90_gp62__00062

Identity

Accession:
NC_049853 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-92
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 55.0 5.67e-01 80.4% 73.6%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 50.0 6.10e-01 80.4% 98.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 52.0 4.70e-01 85.9% 50.0%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 50.0 6.07e-01 80.4% 98.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 4.75e-01 85.9% 50.4%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 52.0 5.93e-01 85.9% 91.2%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 5.96e-01 82.6% 89.0%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.37e-01 85.9% 69.9%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 50.0 5.16e-01 85.9% 70.8%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.29e-01 85.9% 76.8%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.74e-01 82.6% 92.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.27e-01 85.9% 73.3%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 5.00e-01 85.9% 72.1%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 6.23e-01 85.9% 100.0%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.37e-01 84.8% 75.5%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.72 58.0 4.33e-01 90.2% 36.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.69e-01 88.0% 92.3%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 44.0 3.11e-01 81.5% 21.6%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.70 41.0 2.89e-01 88.0% 19.7%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 5.21e-01 84.8% 95.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.36e-01 85.9% 80.0%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.66 53.0 4.22e-01 85.9% 50.6%
2plyB01 1.10.10.2770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 48.0 4.17e-01 81.5% 50.7%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.55e-01 90.2% 98.7%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.38e-01 88.0% 90.6%
5hiwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 49.0 3.23e-01 80.4% 73.1%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 53.0 4.82e-01 88.0% 90.8%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 5.25e-01 79.3% 100.0%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.84e-01 89.1% 78.3%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 4.40e-01 83.7% 70.8%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 5.51e-01 89.1% 100.0%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.05e-01 85.9% 48.3%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.21e-01 88.0% 85.1%
1fokA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.34e-01 96.7% 93.1%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.98e-01 87.0% 79.2%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.62e-01 89.1% 76.7%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 5.14e-01 87.0% 92.9%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 5.12e-01 89.1% 97.5%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 5.23e-01 90.2% 100.0%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 4.13e-01 85.9% 69.6%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 5.00e-01 87.0% 93.0%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.60 53.0 4.41e-01 95.7% 58.3%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.57 39.0 3.97e-01 85.9% 73.0%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 51.0 5.07e-01 100.0% 99.0%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.56 31.0 3.55e-01 88.0% 72.5%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.55 31.0 3.52e-01 88.0% 74.6%
8amqA02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 44.0 2.94e-01 90.2% 40.1%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029028 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 57.0 5.20e-01 81.5% 54.2%
4997427 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 58.0 5.86e-01 84.8% 73.3%
5073482 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 49.0 5.50e-01 81.5% 78.6%
3401123 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.81 55.0 6.06e-01 79.3% 85.3%
4992586 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.81 53.0 6.17e-01 80.4% 93.8%
5044919 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 53.0 5.94e-01 84.8% 84.9%
4958613 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 53.0 5.18e-01 84.8% 63.0%
5031900 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.79 51.0 6.14e-01 85.9% 100.0%
5037107 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 57.0 6.10e-01 84.8% 86.3%
4966661 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.79 52.0 5.59e-01 84.8% 78.5%
4954315 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.79 51.0 5.81e-01 85.9% 87.1%
3413561 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.79 58.0 5.51e-01 84.8% 66.7%
5018202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 51.0 4.67e-01 85.9% 53.0%
5073598 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.77 62.0 6.28e-01 84.8% 93.3%
4560206 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.77 64.0 6.47e-01 88.0% 97.8%
4168969 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.77 64.0 4.42e-01 89.1% 29.7%
4220501 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 62.0 6.17e-01 85.9% 84.2%
4456623 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 63.0 4.92e-01 89.1% 43.7%
4050998 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 63.0 4.80e-01 89.1% 42.4%
4991609 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.76 63.0 6.43e-01 89.1% 96.7%
4231800 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 6.18e-01 88.0% 94.7%
5010332 101.1.2.234 alpha arrays › HTH › HTH › winged helix domain › DUF6995 0.75 48.0 5.43e-01 83.7% 85.7%
4991639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 50.0 5.36e-01 84.8% 78.8%
4071682 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.75 62.0 4.88e-01 88.0% 47.6%
3972365 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 4.91e-01 89.1% 48.1%
3988037 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.75 52.0 5.51e-01 85.9% 81.2%
3971293 101.1.2.845 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_3, SelB_WH_2nd_bact 0.75 51.0 4.53e-01 85.9% 50.0%
5014861 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.75 48.0 5.76e-01 78.3% 100.0%
4438125 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.75 62.0 6.01e-01 88.0% 88.0%
4479128 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.75 63.0 4.92e-01 90.2% 48.1%
2686 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.74 52.0 5.27e-01 85.9% 73.3%
4527970 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.74 62.0 4.75e-01 89.1% 46.5%
5046721 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 5.13e-01 89.1% 71.1%
3602631 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.74 51.0 5.47e-01 88.0% 82.5%
3627133 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.74 59.0 4.62e-01 88.0% 41.6%
5001123 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 49.0 4.90e-01 88.0% 66.3%
5077428 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 59.0 6.02e-01 88.0% 88.9%
3904232 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.72 59.0 5.75e-01 85.9% 84.0%
5054231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.68e-01 85.9% 90.7%
4995114 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 6.06e-01 90.2% 90.5%
5001357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.81e-01 88.0% 96.0%
5052187 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 44.0 4.28e-01 83.7% 54.3%
4219640 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 3.63e-01 89.1% 15.5%
3398316 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.72 54.0 5.65e-01 83.7% 85.9%
4988076 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 49.0 5.56e-01 79.3% 95.6%
3741065 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 54.0 5.42e-01 84.8% 77.9%
5047367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.78e-01 85.9% 96.7%
3782598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 5.92e-01 100.0% 96.2%
3593454 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.70 56.0 4.49e-01 84.8% 84.0%
3987359 101.1.2.272 alpha arrays › HTH › HTH › winged helix domain › DUF1803 0.70 48.0 5.71e-01 78.3% 100.0%
5039794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 5.34e-01 88.0% 86.3%
3228605 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.69 57.0 4.54e-01 89.1% 44.9%
4999511 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.17e-01 89.1% 80.0%
4940719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.52e-01 84.8% 63.4%
3618490 101.1.2.416 alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.68 48.0 4.82e-01 81.5% 72.6%
4993180 183.1.1.1 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.67 44.0 3.94e-01 85.9% 47.7%
3189160 101.1.2.527 alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 0.67 56.0 5.41e-01 96.7% 81.9%
4994253 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.66 51.0 5.64e-01 92.4% 100.0%
3187170 101.1.2.160 alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.66 46.0 4.97e-01 72.8% 98.8%
4992657 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 3.83e-01 91.3% 33.6%
3939193 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.65 50.0 3.58e-01 83.7% 65.4%
5080760 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.64 53.0 5.45e-01 92.4% 91.1%
5000821 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 5.29e-01 93.5% 97.1%
5030996 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.64e-01 84.8% 80.8%
4969349 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.64 51.0 5.41e-01 94.6% 97.5%
4940163 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 4.73e-01 85.9% 74.0%
5062912 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.62 52.0 5.38e-01 94.6% 97.6%
5063554 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.62 53.0 4.68e-01 95.7% 63.7%
4333574 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.60 48.0 4.90e-01 84.8% 86.7%
5077027 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.40e-01 83.7% 69.6%
4990337 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.81e-01 97.8% 93.3%
5019807 101.1.2.894 alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.55 50.0 4.24e-01 98.9% 97.9%
5078899 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 42.0 4.01e-01 87.0% 70.9%