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NC_049856.1__YP_009905342.1__H1Z35_gp017__00017

Bact-Vir

Identity

Accession:: NC_049856 ↗
Kingdom:: phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Audreyjarvisvirus› Lactococcus_phage_AM4

TaxID: 1965472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-82

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7t2rC01	1.10.10.1590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E	0.61	36.0	4.08e-01	73.4%	80.7%
2kvcA01	1.10.150.430	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle	0.60	38.0	3.74e-01	75.9%	58.0%
2hvrA03	1.10.10.1810	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA ligase	0.58	43.0	4.20e-01	78.5%	83.9%
1pu6A01	1.10.1670.10	Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)	0.57	40.0	3.77e-01	73.4%	86.2%
3mw6B00	1.10.1710.10	Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain	0.56	38.0	3.64e-01	78.5%	58.5%
2j5oA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	35.0	3.72e-01	81.0%	73.8%
5wvoC02	1.10.10.2230	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.55	40.0	3.88e-01	79.7%	68.2%
2r44A03	1.10.8.80	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain	0.53	41.0	3.64e-01	84.8%	66.9%
2o57A01	1.10.287.840	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like	0.51	38.0	3.59e-01	84.8%	86.7%
5dmhB02	3.40.980.20	Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › Four-carbon acid sugar kinase, nucleotide binding domain	0.51	35.0	2.73e-01	72.2%	78.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3244785	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.75	49.0	5.18e-01	77.2%	75.7%
3399185	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.75	49.0	4.29e-01	77.2%	46.1%
3935680	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.70	49.0	5.26e-01	77.2%	87.7%
4944726	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.58	36.0	4.01e-01	93.7%	81.7%
3233808	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	41.0	3.49e-01	82.3%	54.6%
4555675	101.1.1.27 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DsrC	0.53	43.0	3.91e-01	92.4%	92.7%
3575508	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	39.0	3.51e-01	82.3%	57.4%
4028772	574.1.1.1 ↗	alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp	0.52	38.0	3.92e-01	89.9%	84.0%
3483301	4964.1.1.0 ↗	alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I	0.51	35.0	2.84e-01	82.3%	37.3%
4034254	162.1.1.1 ↗	alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD	0.51	36.0	3.43e-01	77.2%	94.0%
3992534	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.50	40.0	2.86e-01	94.9%	34.7%

D2 high residues 88-146

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2y24A01	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.54	36.0	3.02e-01	100.0%	38.3%
2mhyA00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.52	30.0	3.10e-01	100.0%	54.4%
3ksrA01	6.20.370.100	Special › Other non-globular › Rhinovirus 14, subunit 4 ›	0.51	27.0	3.32e-01	81.4%	100.0%
5h8iI00	3.60.110.10	Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase	0.50	36.0	2.45e-01	83.1%	89.4%