←Back to structures
NC_049856.1__YP_009905352.1__H1Z35_gp027__00027
Bact-VirNC_049856.1__YP_009905352.1__H1Z35_gp027__00027
Identity
- Accession:
- NC_049856 ↗
- Kingdom:
- phage
Quality
81.5
mean pLDDT
Taxonomy
TaxID: 1965472
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-25_386-613
Domain cluster:
rep: S2_005_003_R2_scaffold_7_prodigal-single.1__X__X__00253__D47-315
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13479.13 best | AAA_24 | 82.2 | 5.90e-23 | 82.2% | 85.1% |
D2
high
residues 33-141_347-384
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
D3
high
residues 153-337
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015396__D229-404
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05204.20 best | Hom_end | 28.5 | 2.00e-06 | 53.0% | 75.4% |
| PF14528.12 | LAGLIDADG_3 | 39.1 | 9.80e-10 | 49.7% | 78.0% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.85 | 72.0 | 7.24e-01 | 94.1% | 86.7% |
| 2cw8A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 68.0 | 7.18e-01 | 98.4% | 95.3% |
| 1ef0B02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.81 | 68.0 | 6.82e-01 | 100.0% | 85.6% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.73 | 70.0 | 6.69e-01 | 100.0% | 89.8% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.73 | 61.0 | 6.07e-01 | 100.0% | 84.3% |
| 1zysA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 27.0 | 3.75e-01 | 93.5% | 81.1% |
| 5hesA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 23.0 | 3.43e-01 | 81.1% | 77.8% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 28.0 | 3.81e-01 | 88.6% | 94.4% |
| 3ly1D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 26.0 | 2.99e-01 | 96.2% | 61.2% |
| 3cq4A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 25.0 | 2.93e-01 | 95.7% | 60.9% |
| 6yllA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 23.0 | 3.34e-01 | 78.4% | 91.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996524 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.82 | 75.0 | 7.36e-01 | 100.0% | 89.7% |
| 4977674 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.82 | 78.0 | 7.29e-01 | 100.0% | 88.2% |
| 4993734 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.81 | 78.0 | 7.27e-01 | 100.0% | 91.4% |
| 4979525 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.81 | 77.0 | 7.54e-01 | 100.0% | 92.8% |
| 3603739 | 101.1.1.498 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 | 0.81 | 77.0 | 6.21e-01 | 100.0% | 64.3% |
| 3300663 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.67 | 28.0 | 4.35e-01 | 91.9% | 100.0% |
| 4954535 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.64 | 30.0 | 4.15e-01 | 94.6% | 87.4% |
| 4977841 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.54 | 24.0 | 3.57e-01 | 78.4% | 95.0% |
| 4144761 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 25.0 | 3.38e-01 | 88.6% | 83.9% |
| 3665392 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 31.0 | 3.76e-01 | 93.5% | 87.5% |
D4
high
residues 648-701
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 49.0 | 4.29e-01 | 100.0% | 46.9% |
| 2dbgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.66 | 54.0 | 4.58e-01 | 100.0% | 76.7% |
| 2af0A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.66 | 45.0 | 3.99e-01 | 77.8% | 48.8% |
| 2ii2A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.63 | 44.0 | 4.10e-01 | 74.1% | 60.9% |
| 3ff5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.47e-01 | 79.6% | 77.8% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.56 | 47.0 | 3.61e-01 | 100.0% | 76.8% |
| 5tgtA02 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 44.0 | 3.56e-01 | 96.3% | 65.0% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.56 | 39.0 | 3.50e-01 | 72.2% | 53.8% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 43.0 | 3.25e-01 | 87.0% | 41.4% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.53 | 45.0 | 4.18e-01 | 100.0% | 84.7% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.50 | 40.0 | 3.60e-01 | 98.1% | 94.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4969545 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 62.0 | 4.07e-01 | 100.0% | 54.4% |
| 4959244 | 102.3.1.1 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha | 0.67 | 52.0 | 4.54e-01 | 85.2% | 58.8% |
| 3968817 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.67 | 59.0 | 5.08e-01 | 100.0% | 67.1% |
| 3271063 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.62 | 41.0 | 3.52e-01 | 70.4% | 66.7% |
| 4473504 | 304.136.1.3 ↗ | a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SGIII | 0.61 | 41.0 | 3.51e-01 | 70.4% | 44.4% |
| 3678733 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.58 | 40.0 | 3.74e-01 | 74.1% | 57.1% |