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NC_049856.1__YP_009905460.1__H1Z35_gp116__00135

Bact-Vir

Identity

Accession:: NC_049856 ↗
Kingdom:: phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Audreyjarvisvirus› Lactococcus_phage_AM4

TaxID: 1965472

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-73

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6opmD01	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.63	46.0	3.11e-01	77.8%	55.5%
6w08A01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.62	46.0	2.93e-01	81.0%	68.8%
1gu2A00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.56	40.0	3.31e-01	77.8%	64.5%
2oceA01	1.10.10.650	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like	0.55	38.0	3.24e-01	73.0%	57.5%
5x9vA01	1.10.560.10	Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain	0.54	44.0	3.08e-01	98.4%	79.2%
2r6fA06	1.20.1580.10	Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain	0.52	36.0	2.99e-01	77.8%	62.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4022295	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.60	46.0	3.51e-01	85.7%	43.8%

D2 medium residues 74-143

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3u4qB04	6.10.140.1030	Special › Helix non-globular › Helix Hairpins ›	0.60	45.0	4.58e-01	95.7%	82.6%
3nb2A02	1.25.40.300	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein	0.60	50.0	4.00e-01	97.1%	88.4%
2oduA02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	42.0	3.71e-01	78.6%	93.3%
5xfaA04	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.54	38.0	3.68e-01	77.1%	78.8%
6p7vD00	3.30.710.10	Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A	0.54	43.0	3.63e-01	90.0%	90.5%
1xx7A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.53	42.0	3.32e-01	92.9%	91.3%
4irlB02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.51	44.0	4.02e-01	95.7%	76.3%
2janA02	1.10.240.10	Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase	0.50	41.0	3.70e-01	92.9%	100.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605377	131.1.1.1 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I	0.62	46.0	2.90e-01	80.0%	31.9%
4074758	5065.1.1.1 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3	0.61	42.0	2.82e-01	72.9%	72.7%
4003517	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	53.0	3.63e-01	98.6%	43.8%
5021502	109.4.1.207 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2	0.60	50.0	3.95e-01	94.3%	43.2%
3190745	226.1.1.0 ↗	a+b two layers › POZ domain › POZ domain › POZ domain	0.60	51.0	4.24e-01	94.3%	52.8%
3477868	109.4.1.470 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2	0.59	51.0	3.12e-01	100.0%	23.7%
3298705	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.59	50.0	3.09e-01	100.0%	16.9%
3659915	192.7.1.45 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp	0.56	38.0	3.74e-01	70.0%	100.0%
5073329	109.2.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid	0.55	43.0	2.98e-01	95.7%	36.3%
3783883	650.1.1.11 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › RPT	0.54	43.0	4.18e-01	91.4%	86.3%
3650365	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.50	43.0	3.99e-01	100.0%	90.5%
5021354	101.1.2.619 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_33	0.50	37.0	3.83e-01	80.0%	90.8%