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NC_049856.1__YP_009905467.1__H1Z35_gp109__00142
Bact-VirNC_049856.1__YP_009905467.1__H1Z35_gp109__00142
Identity
- Accession:
- NC_049856 ↗
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Taxonomy
TaxID: 1965472
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-60
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.80 | 62.0 | 4.73e-01 | 83.0% | 37.6% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.78 | 51.0 | 5.85e-01 | 71.7% | 100.0% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.78 | 69.0 | 5.47e-01 | 100.0% | 54.6% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.78 | 60.0 | 5.69e-01 | 100.0% | 71.4% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.76 | 67.0 | 5.85e-01 | 100.0% | 66.7% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.75 | 66.0 | 4.87e-01 | 100.0% | 76.8% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.75 | 55.0 | 4.43e-01 | 81.1% | 40.4% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 57.0 | 5.62e-01 | 100.0% | 80.4% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 63.0 | 5.40e-01 | 100.0% | 67.9% |
| 2b8iA00 | 1.20.1280.100 | Mainly Alpha › Up-down Bundle › Monooxygenase › Pas factor, saposin domain | 0.70 | 53.0 | 4.72e-01 | 96.2% | 57.1% |
| 2js9A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.70 | 57.0 | 5.10e-01 | 100.0% | 63.0% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.69 | 49.0 | 4.79e-01 | 100.0% | 68.3% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.69 | 60.0 | 5.08e-01 | 100.0% | 61.1% |
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 60.0 | 4.31e-01 | 100.0% | 42.6% |
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.68 | 58.0 | 4.52e-01 | 100.0% | 65.3% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.67 | 57.0 | 4.58e-01 | 100.0% | 67.3% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.67 | 58.0 | 3.84e-01 | 98.1% | 84.4% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 49.0 | 4.32e-01 | 81.1% | 98.7% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 44.0 | 4.47e-01 | 71.7% | 79.6% |
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 52.0 | 4.84e-01 | 100.0% | 69.4% |
| 3dfzA02 | 1.10.8.610 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like | 0.65 | 46.0 | 4.21e-01 | 77.4% | 58.1% |
| 5bqnA02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.64 | 46.0 | 2.85e-01 | 81.1% | 13.3% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.63 | 55.0 | 4.94e-01 | 100.0% | 72.0% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.63 | 54.0 | 5.14e-01 | 96.2% | 82.3% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 44.0 | 4.29e-01 | 73.6% | 74.1% |
| 1cm5A00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.63 | 53.0 | 2.99e-01 | 100.0% | 27.7% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 48.0 | 4.96e-01 | 100.0% | 90.0% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.63 | 45.0 | 4.42e-01 | 94.3% | 71.9% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.61 | 42.0 | 4.00e-01 | 75.5% | 60.3% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.61 | 52.0 | 4.20e-01 | 100.0% | 71.2% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.60 | 48.0 | 3.35e-01 | 98.1% | 39.9% |
| 4rm7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.58 | 47.0 | 3.61e-01 | 96.2% | 66.2% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 47.0 | 4.22e-01 | 100.0% | 74.1% |
| 1vbgA04 | 1.10.189.10 | Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 | 0.58 | 47.0 | 4.45e-01 | 88.7% | 95.2% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 50.0 | 4.27e-01 | 100.0% | 76.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 48.0 | 4.21e-01 | 100.0% | 67.9% |
| 2cazE00 | 1.20.1440.200 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain | 0.56 | 47.0 | 3.92e-01 | 100.0% | 60.4% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 46.0 | 4.02e-01 | 98.1% | 83.3% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 40.0 | 4.14e-01 | 96.2% | 84.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3460419 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.92 | 71.0 | 6.78e-01 | 81.1% | 75.0% |
| 3327496 | 3151.1.1.0 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 | 0.86 | 54.0 | 6.41e-01 | 96.2% | 97.1% |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.85 | 64.0 | 4.54e-01 | 81.1% | 30.2% |
| 3742303 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.84 | 63.0 | 4.23e-01 | 81.1% | 22.7% |
| None | — | 0.82 | 61.0 | 3.84e-01 | 79.2% | 17.6% | |
| 4506328 | 1054.1.1.1 ↗ | alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C | 0.82 | 60.0 | 6.21e-01 | 79.2% | 84.0% |
| 3216068 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.81 | 68.0 | 5.98e-01 | 100.0% | 64.1% |
| 3814902 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.79 | 61.0 | 5.47e-01 | 100.0% | 60.0% |
| 3186807 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.78 | 64.0 | 5.21e-01 | 100.0% | 49.5% |
| 4149728 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.78 | 57.0 | 5.01e-01 | 79.2% | 55.0% |
| 4112669 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.78 | 69.0 | 4.75e-01 | 100.0% | 70.6% |
| 4298800 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.77 | 68.0 | 4.39e-01 | 100.0% | 43.3% |
| 3959563 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.77 | 68.0 | 4.43e-01 | 100.0% | 45.1% |
| 4376325 | 4958.1.1.2 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_4 | 0.77 | 68.0 | 4.82e-01 | 100.0% | 73.1% |
| 3818805 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.77 | 59.0 | 5.52e-01 | 100.0% | 67.7% |
| 4357137 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.76 | 68.0 | 4.66e-01 | 100.0% | 71.4% |
| 4943605 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.76 | 68.0 | 4.34e-01 | 100.0% | 21.3% |
| 4513601 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.76 | 67.0 | 3.84e-01 | 100.0% | 20.9% |
| 3821967 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.76 | 64.0 | 5.65e-01 | 100.0% | 65.3% |
| 3386456 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.75 | 62.0 | 5.37e-01 | 90.6% | 85.0% |
| 3831406 | 509.1.1.12 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 | 0.74 | 58.0 | 5.34e-01 | 100.0% | 65.7% |
| 3927392 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.74 | 61.0 | 5.40e-01 | 100.0% | 62.5% |
| 4933924 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 57.0 | 5.47e-01 | 94.3% | 76.7% |
| 3505207 | 2004.1.3.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR,EKR | 0.71 | 63.0 | 3.99e-01 | 98.1% | 65.9% |
| 4189854 | 2004.1.3.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR,EKR | 0.71 | 63.0 | 3.96e-01 | 98.1% | 66.3% |
| 3511354 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.71 | 49.0 | 5.38e-01 | 94.3% | 97.5% |
| 4980833 | 2004.1.3.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.71 | 62.0 | 3.98e-01 | 98.1% | 71.2% |
| 5062595 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.70 | 62.0 | 3.93e-01 | 98.1% | 68.5% |
| 3518340 | 2004.1.3.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR,EKR | 0.70 | 62.0 | 3.97e-01 | 98.1% | 71.2% |
| 3624928 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.70 | 48.0 | 3.09e-01 | 92.5% | 16.2% |
| 3605793 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.70 | 60.0 | 5.39e-01 | 100.0% | 70.7% |
| 3662970 | 101.1.1.426 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SAGA-Tad1 | 0.69 | 50.0 | 4.73e-01 | 100.0% | 64.6% |
| 4875922 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.68 | 60.0 | 4.00e-01 | 100.0% | 28.6% |
| 3238440 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.68 | 57.0 | 5.39e-01 | 100.0% | 89.2% |
| 3868 | 4204.1.1.1 ↗ | alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like | 0.67 | 57.0 | 4.60e-01 | 100.0% | 68.5% |
| 4944936 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.67 | 50.0 | 4.64e-01 | 94.3% | 64.3% |
| 3580853 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 53.0 | 5.07e-01 | 100.0% | 78.5% |
| 3329778 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.63 | 45.0 | 3.05e-01 | 98.1% | 18.7% |
| 3249906 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.62 | 52.0 | 4.57e-01 | 100.0% | 62.4% |
| 3688917 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 51.0 | 3.98e-01 | 96.2% | 85.6% |
| 3221760 | 604.1.1.140 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27005 | 0.59 | 50.0 | 4.40e-01 | 100.0% | 82.4% |
| 3372011 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.59 | 42.0 | 2.89e-01 | 98.1% | 19.1% |
| 3341807 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.58 | 50.0 | 4.04e-01 | 98.1% | 61.8% |