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NC_049856.1__YP_009905497.1__H1Z35_gp079__00172

Bact-Vir

NC_049856.1__YP_009905497.1__H1Z35_gp079__00172

Identity

Accession:
NC_049856 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Audreyjarvisvirus› Lactococcus_phage_AM4

TaxID: 1965472

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-71
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.86 60.0 6.06e-01 100.0% 72.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.37e-01 100.0% 76.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 51.0 5.13e-01 100.0% 70.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.46e-01 98.4% 79.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 52.0 5.66e-01 100.0% 87.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 4.82e-01 100.0% 61.6%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 4.96e-01 100.0% 52.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.32e-01 100.0% 79.0%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 4.95e-01 100.0% 58.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.88e-01 100.0% 90.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 51.0 5.30e-01 100.0% 83.3%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 55.0 5.12e-01 89.1% 96.3%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 60.0 4.86e-01 100.0% 80.5%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 4.37e-01 100.0% 55.1%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.29e-01 100.0% 89.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.99e-01 100.0% 79.2%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 53.0 4.47e-01 93.8% 80.4%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 44.0 3.56e-01 79.7% 71.0%
3n4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 47.0 3.80e-01 85.9% 74.8%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 49.0 3.30e-01 95.3% 47.9%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 43.0 3.64e-01 79.7% 89.5%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.58 51.0 4.94e-01 100.0% 87.5%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 41.0 3.52e-01 78.1% 90.4%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 42.0 3.45e-01 79.7% 82.7%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 48.0 3.03e-01 98.4% 76.6%
1rvkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 41.0 3.49e-01 78.1% 89.7%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 42.0 3.61e-01 82.8% 85.5%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.32e-01 81.2% 43.6%
5e1qB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 45.0 3.08e-01 95.3% 38.5%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 40.0 3.48e-01 85.9% 48.1%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.69e-01 95.3% 71.8%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.91e-01 96.9% 69.2%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.21e-01 89.1% 83.5%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.54 48.0 4.66e-01 100.0% 93.0%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.53 43.0 3.76e-01 95.3% 75.7%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 40.0 3.10e-01 82.8% 47.7%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 44.0 2.87e-01 95.3% 37.3%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.35e-01 87.5% 68.2%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 41.0 3.16e-01 93.8% 40.2%
3cb6A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.52 40.0 2.78e-01 90.6% 93.2%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.03e-01 82.8% 41.8%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.19e-01 82.8% 81.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.71 63.0 5.02e-01 100.0% 79.2%
4029165 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 49.0 2.93e-01 100.0% 11.9%
3611282 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.65 43.0 3.35e-01 71.9% 31.4%
3498991 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 43.0 2.78e-01 93.8% 15.8%
1174509 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.61 45.0 3.70e-01 79.7% 81.0%
4305490 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.61 44.0 3.56e-01 79.7% 81.5%
3388439 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.61 45.0 3.05e-01 81.2% 30.8%
4644245 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 48.0 3.24e-01 87.5% 30.5%
4284296 12.3.1.22 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N 0.59 47.0 3.31e-01 93.8% 46.1%
3904923 2.1.1.239 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CaKB 0.59 44.0 3.65e-01 84.4% 72.8%
4936007 3994.1.1.2 ↗ a+b two layers › C-P lyase subunit PhnG › C-P lyase subunit PhnG › C-P lyase subunit PhnG › PhnG 0.58 45.0 3.61e-01 89.1% 55.6%
1789717 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.58 40.0 3.95e-01 73.4% 78.6%
5012554 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 3.24e-01 89.1% 34.1%
3397439 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 40.0 3.24e-01 73.4% 48.8%
4021196 270.1.1.0 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.57 44.0 3.58e-01 87.5% 73.3%
1261179 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.57 41.0 3.19e-01 79.7% 38.3%
2141160 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 43.0 3.78e-01 84.4% 66.3%
1174546 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 40.0 3.32e-01 81.2% 46.4%
5027407 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.55 39.0 3.35e-01 78.1% 95.6%
4441207 218.1.1.5 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N 0.55 40.0 3.46e-01 79.7% 64.5%
4254206 12.3.1.22 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N 0.55 43.0 2.97e-01 93.8% 37.5%
5078649 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 44.0 3.21e-01 93.8% 63.5%
3623547 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 39.0 3.83e-01 79.7% 91.4%
4986251 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 35.0 3.20e-01 92.2% 47.8%
3186184 270.1.1.0 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.52 41.0 3.24e-01 92.2% 74.4%
3795408 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.52 41.0 3.85e-01 96.9% 83.3%
4963523 7504.1.1.2 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.51 43.0 3.23e-01 98.4% 95.9%
4445572 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.51 36.0 2.96e-01 93.8% 37.7%
3362248 632.3.1.20 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF28698 0.51 34.0 3.59e-01 70.3% 90.0%