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NC_049857.1__YP_009905603.1__H1Z36_gp163__00084

Bact-Vir

NC_049857.1__YP_009905603.1__H1Z36_gp163__00084

Identity

Accession:
NC_049857 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Audreyjarvisvirus› Lactococcus_phage_P1048

TaxID: 2662295

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-36_48-128
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07463.17 best NUMOD4 26.9 6.30e-06 44.4% 91.8%
PF13392.13 HNH_3 44.0 1.80e-11 42.6% 97.8%
D2 high residues 145-195
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 57.0 5.19e-01 78.4% 59.1%
4jp0A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 47.0 5.38e-01 84.3% 100.0%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 60.0 4.88e-01 98.0% 50.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.71 59.0 4.66e-01 94.1% 92.7%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.92e-01 96.1% 63.6%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.75e-01 100.0% 89.7%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 5.42e-01 100.0% 82.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.39e-01 80.4% 51.2%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 4.90e-01 100.0% 59.8%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 51.0 4.69e-01 94.1% 61.4%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 5.22e-01 88.2% 95.1%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 55.0 5.47e-01 98.0% 100.0%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.30e-01 100.0% 77.6%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.11e-01 100.0% 72.2%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.30e-01 100.0% 82.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.36e-01 98.0% 92.9%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 51.0 3.88e-01 88.2% 78.5%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.59e-01 98.0% 70.6%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 44.0 3.92e-01 74.5% 56.4%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.90e-01 100.0% 94.0%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 3.88e-01 100.0% 50.4%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 49.0 4.94e-01 96.1% 96.0%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 47.0 3.62e-01 88.2% 76.4%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.58 40.0 3.48e-01 76.5% 48.3%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.57 45.0 4.15e-01 100.0% 67.6%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.38e-01 100.0% 94.0%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 42.0 3.27e-01 84.3% 42.7%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.16e-01 100.0% 91.7%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 44.0 4.32e-01 98.0% 100.0%
1mi1A02 1.10.1540.10 Mainly Alpha › Orthogonal Bundle › Neurobeachin; Chain: A, domain 1 › BEACH domain 0.54 41.0 2.67e-01 92.2% 99.3%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.89e-01 98.0% 79.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.42e-01 100.0% 65.0%
6ll8A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.52 41.0 2.98e-01 100.0% 28.0%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.51 40.0 3.29e-01 100.0% 84.3%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.51 40.0 3.91e-01 90.2% 100.0%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3422141 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 65.0 6.20e-01 86.3% 83.3%
5016985 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 58.0 6.13e-01 90.2% 86.7%
3509240 101.1.1.24 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.80 55.0 5.08e-01 90.2% 56.9%
4342882 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.77 55.0 5.27e-01 78.4% 65.0%
5022370 101.1.1.9 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.76 54.0 4.69e-01 76.5% 51.2%
3986709 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 56.0 5.36e-01 90.2% 68.3%
3980686 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.75 54.0 5.50e-01 90.2% 80.0%
4612964 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.75 53.0 5.58e-01 78.4% 86.7%
5002944 101.1.3.11 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 0.75 56.0 4.17e-01 96.1% 32.8%
4963466 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.75 55.0 5.80e-01 92.2% 91.1%
4972037 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 5.64e-01 90.2% 84.0%
3984540 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.74 53.0 5.19e-01 78.4% 70.9%
3603167 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.74 57.0 5.34e-01 100.0% 67.7%
3283589 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.74 55.0 5.64e-01 94.1% 84.0%
4479024 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.74 61.0 6.22e-01 98.0% 100.0%
4603528 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.73 54.0 4.81e-01 98.0% 54.7%
3277793 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 6.14e-01 100.0% 100.0%
4993585 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 57.0 5.45e-01 98.0% 75.0%
4449179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.55e-01 100.0% 78.3%
3312056 101.1.1.196 ↗ alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.71 56.0 5.90e-01 100.0% 100.0%
5074940 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.71 58.0 5.75e-01 94.1% 85.5%
4965520 101.1.1.556 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.71 54.0 5.36e-01 86.3% 78.2%
4318089 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.71 57.0 5.51e-01 100.0% 78.3%
4010677 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.71 57.0 4.69e-01 94.1% 50.0%
3808581 101.1.4.86 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › RWP-RK 0.71 56.0 5.24e-01 100.0% 69.2%
3987778 101.1.1.118 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 0.70 51.0 5.03e-01 90.2% 74.5%
3463281 101.1.1.196 ↗ alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.70 56.0 5.19e-01 100.0% 69.2%
3928067 101.1.1.356 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.69 50.0 4.92e-01 90.2% 74.5%
3945993 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.62e-01 98.0% 100.0%
3937075 101.1.1.62 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 0.69 50.0 4.91e-01 90.2% 74.5%
3407600 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 51.0 4.93e-01 96.1% 70.0%
3929674 101.1.1.195 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 0.68 50.0 5.06e-01 92.2% 82.0%
1822676 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.68 49.0 4.79e-01 88.2% 70.9%
3589664 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.68 58.0 4.97e-01 100.0% 74.1%
4610234 101.1.2.89 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.67 54.0 5.28e-01 100.0% 83.3%
3934282 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.35e-01 100.0% 88.0%
3938920 101.1.1.397 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF30176 0.67 52.0 5.48e-01 100.0% 97.8%
4040211 101.1.2.89 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.67 54.0 5.24e-01 100.0% 83.3%
3924290 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 48.0 5.01e-01 78.4% 86.7%
5074939 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 55.0 5.42e-01 96.1% 87.3%
1764926 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 4.72e-01 78.4% 79.2%
5073467 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 52.0 5.39e-01 98.0% 100.0%
1769338 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.92e-01 100.0% 71.4%
3923654 101.1.1.356 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.65 49.0 4.73e-01 100.0% 73.3%
3929142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.64e-01 92.2% 71.7%
3964709 101.1.1.118 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 0.64 47.0 4.74e-01 94.1% 82.0%
3925034 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 46.0 4.53e-01 82.4% 74.5%
2080414 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 51.0 4.97e-01 100.0% 88.1%
5044655 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 49.0 4.96e-01 100.0% 92.0%
3931341 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.13e-01 100.0% 50.0%
5072420 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.92e-01 96.1% 92.0%
4928849 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.61e-01 100.0% 76.7%
3588243 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 41.0 4.02e-01 72.5% 70.0%
4979789 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.60 44.0 4.41e-01 92.2% 78.2%
5072283 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.74e-01 94.1% 85.5%
5013089 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.77e-01 100.0% 94.0%
3938158 2004.5.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 0.57 41.0 2.93e-01 96.1% 22.1%
5055912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.28e-01 100.0% 71.4%
5068679 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.57 46.0 4.53e-01 100.0% 90.9%
4980888 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.33e-01 100.0% 76.9%
5062184 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.56 45.0 4.39e-01 100.0% 83.3%
4941526 101.1.2.100 ↗ alpha arrays › HTH › HTH › winged helix domain › FeoC 0.56 44.0 4.37e-01 92.2% 83.6%
3963583 2008.1.1.67 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.55 46.0 2.90e-01 100.0% 17.4%
4665755 101.1.1.470 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_terminase 0.55 44.0 4.47e-01 98.0% 96.0%
3781360 627.1.1.1 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.52 43.0 3.12e-01 100.0% 45.7%
3881313 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.95e-01 100.0% 75.4%