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NC_049857.1__YP_009905622.1__H1Z36_gp144__00103

Bact-Vir

NC_049857.1__YP_009905622.1__H1Z36_gp144__00103

Identity

Accession:
NC_049857 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Audreyjarvisvirus› Lactococcus_phage_P1048

TaxID: 2662295

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-80
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.67 58.0 4.36e-01 95.8% 42.4%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 56.0 4.18e-01 98.6% 46.1%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.64 49.0 4.82e-01 85.9% 83.3%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 49.0 3.69e-01 84.5% 97.2%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.63 43.0 3.71e-01 74.6% 45.9%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 55.0 4.16e-01 98.6% 45.7%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 54.0 4.55e-01 100.0% 61.1%
2ghrA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.62 54.0 3.75e-01 100.0% 48.0%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.62 52.0 4.77e-01 95.8% 70.8%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.62 47.0 4.29e-01 83.1% 73.7%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.61 42.0 4.16e-01 83.1% 67.5%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.61 49.0 3.66e-01 90.1% 79.3%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 33.0 3.62e-01 83.1% 66.1%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.60 48.0 3.80e-01 98.6% 42.3%
5u81A01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 49.0 3.35e-01 91.5% 95.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 51.0 4.46e-01 95.8% 84.4%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 42.0 2.84e-01 95.8% 19.1%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.93e-01 90.1% 75.6%
6dxwA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.59 47.0 3.33e-01 88.7% 84.3%
3jbtA06 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.78e-01 77.5% 27.6%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 41.0 3.47e-01 97.2% 42.0%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.58 39.0 3.87e-01 70.4% 66.7%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 41.0 3.77e-01 100.0% 56.1%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 47.0 3.18e-01 94.4% 84.3%
5inhA04 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.57 50.0 3.36e-01 100.0% 85.0%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 50.0 3.68e-01 100.0% 67.3%
1v7wA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 49.0 3.28e-01 100.0% 69.5%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 50.0 4.10e-01 98.6% 87.3%
2l1sA00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.55 36.0 3.44e-01 100.0% 56.6%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.55 41.0 4.32e-01 83.1% 87.7%
3q1nA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.02e-01 94.4% 79.3%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.54 39.0 3.52e-01 95.8% 53.9%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 47.0 3.89e-01 98.6% 97.7%
1vq8E02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 45.0 4.21e-01 97.2% 95.7%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 3.34e-01 95.8% 38.7%
4jd2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 3.09e-01 80.3% 54.8%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.92e-01 85.9% 83.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 39.0 3.94e-01 97.2% 79.7%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.15e-01 74.6% 97.6%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 45.0 4.07e-01 95.8% 76.8%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 43.0 3.09e-01 100.0% 92.3%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 38.0 3.78e-01 78.9% 77.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 44.0 3.15e-01 100.0% 90.4%
4lrjA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 38.0 3.52e-01 76.1% 97.7%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.73e-01 94.4% 82.4%
1i3oF00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.50 35.0 3.28e-01 80.3% 57.0%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 44.0 2.87e-01 100.0% 30.0%
3ohsX02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 38.0 2.74e-01 81.7% 85.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941741 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 68.0 5.44e-01 100.0% 93.6%
3668171 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.69 54.0 4.45e-01 84.5% 47.2%
3947988 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 59.0 4.91e-01 95.8% 97.6%
3450849 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.66 49.0 4.13e-01 78.9% 94.2%
5035266 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.66 57.0 5.52e-01 100.0% 85.5%
3403609 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.66 54.0 5.29e-01 100.0% 83.5%
5072901 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.66 55.0 5.39e-01 100.0% 85.0%
3633088 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 45.0 2.85e-01 71.8% 25.4%
3899940 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.64 54.0 5.23e-01 100.0% 86.3%
3912902 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.64 45.0 4.28e-01 83.1% 62.4%
4218376 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.64 49.0 4.42e-01 84.5% 87.0%
4928574 241.11.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.62 53.0 4.98e-01 98.6% 77.3%
4034136 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.61 50.0 3.29e-01 90.1% 34.7%
3803371 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.61 42.0 2.79e-01 71.8% 29.0%
3458155 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 41.0 2.72e-01 71.8% 26.2%
3254426 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 41.0 3.34e-01 71.8% 46.7%
3831261 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.59 50.0 3.61e-01 97.2% 97.3%
3736427 213.1.1.107 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47, PF28379 0.59 46.0 3.13e-01 85.9% 30.9%
3560397 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.59 51.0 3.46e-01 100.0% 81.4%
3364560 5.1.3.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2 0.59 41.0 2.69e-01 71.8% 31.4%
3920058 708.1.2.10 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › HECT_2 0.59 39.0 3.13e-01 74.6% 33.3%
3827259 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.58 41.0 2.76e-01 74.6% 36.5%
4978331 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 48.0 4.92e-01 100.0% 97.1%
3884395 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.58 41.0 3.88e-01 84.5% 60.0%
4939844 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.57 46.0 4.69e-01 88.7% 98.6%
3374974 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.57 47.0 3.28e-01 90.1% 37.8%
5048969 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.57 43.0 4.26e-01 81.7% 93.3%
4971247 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 48.0 4.65e-01 100.0% 93.8%
3436743 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 40.0 2.64e-01 76.1% 25.3%
3572186 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.56 48.0 3.26e-01 100.0% 80.0%
3536311 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.56 42.0 2.91e-01 81.7% 34.9%
4341629 12.3.1.29 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_3 0.56 46.0 3.27e-01 100.0% 90.0%
3937567 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 40.0 2.66e-01 76.1% 25.9%
119490 57.1.1.2 ↗ beta complex topology › Cloacin translocation domain › Cloacin translocation domain › Cloacin translocation domain › Pyocin_S 0.55 45.0 3.60e-01 91.5% 92.7%
3181774 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.55 44.0 2.92e-01 91.5% 86.7%
5023404 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.55 49.0 3.44e-01 100.0% 31.6%
3359496 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 39.0 2.69e-01 76.1% 27.5%
3905773 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.55 46.0 3.58e-01 100.0% 85.6%
4978329 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.54 45.0 4.35e-01 100.0% 90.4%
142104 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.54 45.0 3.02e-01 94.4% 79.3%
3437522 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.54 44.0 3.67e-01 88.7% 92.0%
3223040 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.53 43.0 3.13e-01 100.0% 83.9%
4958446 241.9.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.53 46.0 3.93e-01 100.0% 71.7%
3489607 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.52 37.0 2.60e-01 74.6% 95.8%
3264726 376.1.1.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var 0.51 42.0 3.68e-01 94.4% 85.5%
3853107 5.1.3.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2 0.50 43.0 2.91e-01 97.2% 97.9%
1498413 3894.1.1.0 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.50 44.0 3.68e-01 100.0% 65.6%