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NC_049917.1__YP_009907840.1__H3H22_gp50__00053

Bact-Vir

NC_049917.1__YP_009907840.1__H3H22_gp50__00053

Identity

Accession:
NC_049917 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oslovirus› Escherichia_phage_Lyz12581Vzw

TaxID: 2590400

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-90
PDB
Domain cluster: rep: NC_025830.1__YP_009111194.1__Av05_00120__00120__D5-74
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13935.12 best Ead_Ea22 53.6 5.00e-14 98.8% 44.6%
D2 medium residues 92-182
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.61 49.0 3.14e-01 86.8% 37.5%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.59 41.0 4.42e-01 70.3% 89.5%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 44.0 2.98e-01 82.4% 58.8%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 36.0 3.14e-01 72.5% 39.7%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 38.0 3.35e-01 70.3% 99.3%
2y7jA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 31.0 3.18e-01 78.0% 52.2%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 3.15e-01 93.4% 60.2%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 42.0 3.03e-01 84.6% 74.7%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 43.0 2.94e-01 84.6% 61.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.88e-01 79.1% 58.9%
4yy8A02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 41.0 2.93e-01 85.7% 60.4%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.96e-01 96.7% 58.6%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.83e-01 86.8% 40.9%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 3.27e-01 72.5% 96.8%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 36.0 2.92e-01 72.5% 85.0%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.93e-01 91.2% 55.4%
4redB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 31.0 3.20e-01 92.3% 63.1%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.30e-01 74.7% 79.2%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 37.0 2.76e-01 76.9% 49.6%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 40.0 2.79e-01 86.8% 40.3%
3n9xA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.03e-01 73.6% 85.1%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.81e-01 90.1% 54.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3395721 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 37.0 2.53e-01 87.9% 15.7%
4017784 5.1.3.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF26607 0.58 46.0 3.17e-01 85.7% 55.6%
3805475 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 44.0 3.05e-01 82.4% 38.8%
3392759 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 43.0 2.89e-01 82.4% 39.5%
4016906 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 2.95e-01 73.6% 83.7%
4891036 5.1.5.92 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EML 0.56 43.0 3.02e-01 82.4% 45.8%
3459798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 43.0 2.94e-01 85.7% 38.6%
3344355 5.1.4.227 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_At4g14310 0.55 46.0 3.04e-01 94.5% 62.6%
4028738 5.1.4.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.55 43.0 2.99e-01 86.8% 58.2%
3635717 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 39.0 2.68e-01 78.0% 93.4%
3695422 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 3.12e-01 85.7% 45.1%
4673289 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 38.0 3.05e-01 72.5% 96.6%
4035868 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.53 36.0 3.23e-01 70.3% 90.8%
4970213 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.81e-01 86.8% 44.2%
3325704 5.1.4.222 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.52 39.0 2.68e-01 81.3% 57.7%
3421020 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 3.07e-01 85.7% 68.2%
5008207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.64e-01 71.4% 78.8%
4928905 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 36.0 2.86e-01 72.5% 64.4%
2755263 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.51 37.0 3.31e-01 76.9% 69.2%
3276604 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.50 39.0 2.83e-01 85.7% 63.4%
3786743 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 39.0 2.88e-01 85.7% 45.8%
D3 medium residues 183-233
PDB