←Back to structures

NC_049919.1__YP_009907948.1__H3H24_gp03__00003

Bact-Vir

NC_049919.1__YP_009907948.1__H3H24_gp03__00003

Identity

Accession:
NC_049919 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Traversvirus› Escherichia_phage_SH2026Stx1

TaxID: 2108115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-82
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13973.13 best DUF4222 48.2 8.70e-13 62.2% 86.8%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 4.91e-01 71.6% 70.4%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 4.86e-01 71.6% 73.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.62e-01 75.7% 67.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.42e-01 71.6% 73.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.97e-01 78.4% 90.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 45.0 4.62e-01 70.3% 90.0%
2vqrA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.63 54.0 3.25e-01 91.9% 19.0%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.57 44.0 2.76e-01 82.4% 76.5%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 40.0 3.85e-01 74.3% 69.0%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 2.80e-01 87.8% 24.6%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 44.0 2.77e-01 90.5% 75.5%
2jh1A01 3.90.640.70 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.53 39.0 3.52e-01 79.7% 96.3%
3aqgB00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 35.0 2.91e-01 70.3% 97.1%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.38e-01 79.7% 93.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 62.0 3.55e-01 81.1% 15.5%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.79 53.0 5.81e-01 71.6% 85.0%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 48.0 4.84e-01 70.3% 66.7%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.72 52.0 5.19e-01 75.7% 85.3%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 51.0 5.16e-01 75.7% 85.3%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 49.0 5.25e-01 71.6% 93.8%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 50.0 4.81e-01 74.3% 71.8%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 5.43e-01 75.7% 98.2%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 50.0 4.49e-01 77.0% 73.0%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 50.0 5.03e-01 79.7% 90.7%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 49.0 4.82e-01 81.1% 91.3%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 48.0 3.62e-01 81.1% 44.0%
None — 0.62 50.0 2.74e-01 86.5% 49.7%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 2.66e-01 86.5% 41.7%
4952379 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.59 50.0 3.37e-01 94.6% 25.7%
5070602 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 41.0 3.32e-01 81.1% 44.3%
4487487 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.50 43.0 3.01e-01 100.0% 94.1%