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NC_049923.1__YP_009908283.1__H3H28_gp14__00012

Bact-Vir

NC_049923.1__YP_009908283.1__H3H28_gp14__00012

Identity

Accession:
NC_049923 ↗
Kingdom:
phage

Quality

96.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Traversvirus› Stx2-converting_phage_Stx2a_WGPS9

TaxID: 1226258

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-90
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09907.16 best HigB_toxin 100.9 5.20e-29 80.9% 96.0%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.78 70.0 7.06e-01 100.0% 96.6%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.74 66.0 6.62e-01 100.0% 95.5%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.73 60.0 6.11e-01 96.6% 90.8%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.72 61.0 6.00e-01 100.0% 87.4%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.65 58.0 5.83e-01 100.0% 97.8%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 42.0 2.82e-01 70.8% 21.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 3.02e-01 77.5% 33.5%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 2.84e-01 74.2% 30.3%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 45.0 3.10e-01 78.7% 35.6%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 44.0 2.97e-01 77.5% 37.3%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 43.0 2.87e-01 77.5% 31.7%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 42.0 3.79e-01 95.5% 54.4%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 50.0 3.99e-01 96.6% 98.9%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.58 48.0 4.78e-01 96.6% 89.1%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.75e-01 74.2% 30.4%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.84e-01 78.7% 34.2%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.58 45.0 3.69e-01 85.4% 76.3%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.57 44.0 4.10e-01 84.3% 90.5%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.85e-01 77.5% 33.9%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 51.0 3.34e-01 100.0% 31.3%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.67e-01 74.2% 35.1%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 29.0 3.13e-01 95.5% 55.8%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.70e-01 77.5% 29.0%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 43.0 2.90e-01 83.1% 85.7%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 46.0 3.41e-01 95.5% 88.9%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.16e-01 76.4% 52.0%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 40.0 2.78e-01 79.8% 35.4%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 41.0 2.83e-01 83.1% 36.2%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.52 39.0 2.93e-01 79.8% 67.4%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 46.0 4.01e-01 100.0% 65.2%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 44.0 4.00e-01 95.5% 76.7%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.95e-01 96.6% 91.5%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 38.0 2.56e-01 78.7% 38.8%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.51 39.0 3.69e-01 100.0% 69.5%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.08e-01 79.8% 57.1%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.57e-01 88.8% 76.4%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 35.0 2.66e-01 73.0% 47.2%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082625 4312.1.1.7 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.97 93.0 9.29e-01 100.0% 97.8%
4616795 4312.1.1.7 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.94 90.0 8.61e-01 100.0% 91.0%
2706250 4312.1.1.7 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.94 89.0 8.36e-01 100.0% 86.7%
4967722 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 70.0 7.34e-01 98.9% 100.0%
5014147 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 70.0 7.32e-01 97.8% 100.0%
5071213 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.82 67.0 7.10e-01 95.5% 96.2%
5014619 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 67.0 7.06e-01 96.6% 96.2%
4966983 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.82 68.0 7.13e-01 94.4% 97.5%
5031617 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.82 68.0 7.15e-01 93.3% 97.5%
3602698 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 70.0 7.23e-01 100.0% 96.5%
4933908 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 69.0 7.05e-01 95.5% 95.3%
5007064 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.80 62.0 6.68e-01 95.5% 97.3%
4999510 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 69.0 7.10e-01 100.0% 96.5%
4968316 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 68.0 6.88e-01 97.8% 92.0%
4950220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 71.0 7.09e-01 100.0% 94.4%
4941220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 65.0 6.79e-01 97.8% 96.2%
4928181 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 66.0 6.78e-01 100.0% 92.9%
5063859 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 64.0 6.75e-01 95.5% 96.2%
5029836 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.78 65.0 6.80e-01 100.0% 97.5%
4948982 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.78 70.0 7.00e-01 100.0% 95.6%
5029202 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.78 64.0 6.56e-01 100.0% 91.8%
5032565 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.78 66.0 6.77e-01 97.8% 95.3%
4927100 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.78 69.0 6.93e-01 95.5% 97.8%
3975793 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.77 61.0 6.01e-01 100.0% 78.9%
5005256 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 67.0 6.83e-01 98.9% 96.5%
3942405 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.77 61.0 5.96e-01 100.0% 78.9%
4966674 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 64.0 6.61e-01 100.0% 94.1%
5080427 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.77 62.0 6.55e-01 100.0% 96.2%
5007067 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.76 69.0 6.90e-01 100.0% 96.7%
4984297 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.76 66.0 6.57e-01 98.9% 91.1%
4968774 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.76 60.0 6.48e-01 94.4% 100.0%
4969644 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 67.0 6.76e-01 96.6% 96.7%
5018720 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 65.0 6.63e-01 98.9% 96.5%
4937462 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 68.0 6.72e-01 100.0% 95.8%
138730 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.74 66.0 6.62e-01 100.0% 95.5%
4962176 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.72 60.0 6.26e-01 95.5% 98.8%
3604507 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.72 62.0 6.17e-01 100.0% 89.4%
134040 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.72 61.0 6.00e-01 100.0% 87.4%
4363733 4312.1.1.13 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Toxin_YhaV 0.72 66.0 5.52e-01 100.0% 81.4%
4937737 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 61.0 6.28e-01 96.6% 97.6%
5078519 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.70 64.0 6.30e-01 100.0% 96.8%
4463632 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.68 61.0 6.15e-01 97.8% 97.8%
4942674 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.67 48.0 5.30e-01 94.4% 100.0%
166546 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.65 58.0 5.83e-01 100.0% 97.8%
3189690 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.64 45.0 2.93e-01 74.2% 27.5%
4545587 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.61 43.0 2.73e-01 74.2% 31.5%
3300728 5.1.4.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBP56 0.60 44.0 2.78e-01 78.7% 28.4%
2989643 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.59 43.0 2.87e-01 77.5% 31.4%
3192570 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.59 43.0 2.80e-01 76.4% 20.1%
3735233 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.58 46.0 3.04e-01 84.3% 84.5%
3627791 5.1.4.94 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.58 41.0 2.75e-01 73.0% 21.9%
3242246 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.58 45.0 3.04e-01 84.3% 81.9%
3932344 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.58 45.0 3.04e-01 83.1% 83.2%
3740435 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.58 42.0 2.81e-01 75.3% 22.6%
3749898 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.84e-01 78.7% 33.8%
3546218 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 2.80e-01 77.5% 33.5%
3944258 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.58 50.0 4.87e-01 96.6% 100.0%
3612513 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 40.0 2.68e-01 73.0% 29.7%
3181617 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.57 48.0 3.15e-01 94.4% 87.4%
3409624 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.57 40.0 2.54e-01 74.2% 29.2%
3198523 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.57 43.0 2.80e-01 82.0% 37.8%
3593907 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.91e-01 78.7% 43.1%
3613891 5.1.4.341 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.56 40.0 2.57e-01 74.2% 22.8%
3574041 5.1.13.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › Det1 0.55 44.0 2.79e-01 87.6% 34.8%
4631877 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.54 39.0 2.38e-01 74.2% 23.8%
5040209 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.54 46.0 2.97e-01 94.4% 90.0%
3466402 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 38.0 2.83e-01 74.2% 34.0%
3801015 5.1.4.94 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.53 46.0 2.94e-01 100.0% 24.4%
3237256 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.53 46.0 2.96e-01 97.8% 92.8%
4187396 5.1.4.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBP56 0.52 45.0 2.90e-01 100.0% 87.0%
3215204 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 44.0 3.29e-01 95.5% 52.5%
3245356 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.52 47.0 3.10e-01 100.0% 29.6%
3629728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.80e-01 100.0% 62.2%
3788785 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.50 45.0 2.84e-01 100.0% 33.8%