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NC_049930.1__YP_009908777.1__H3T63_gp12__00012
Bact-VirNC_049930.1__YP_009908777.1__H3T63_gp12__00012
Identity
- Accession:
- NC_049930 ↗
- Kingdom:
- phage
Quality
61.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Rountreeviridae›
Minhovirus›
Enterococcus_phage_vB_EfaP_Zip
TaxID: 2501743
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 242-341
D2
high
residues 503-665
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.89 | 79.0 | 7.12e-01 | 100.0% | 70.9% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 28.0 | 4.41e-01 | 100.0% | 93.8% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.63 | 59.0 | 5.63e-01 | 98.2% | 93.0% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.63 | 58.0 | 5.26e-01 | 98.2% | 77.1% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 29.0 | 3.36e-01 | 94.5% | 61.3% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 23.0 | 3.15e-01 | 92.6% | 83.5% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 26.0 | 3.55e-01 | 70.6% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590884 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.93 | 73.0 | 8.10e-01 | 96.9% | 97.7% |
| 1905738 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.86 | 73.0 | 7.70e-01 | 100.0% | 96.6% |
| 3279614 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.75 | 61.0 | 6.33e-01 | 100.0% | 88.4% |
| 4015238 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.74 | 55.0 | 6.25e-01 | 96.9% | 100.0% |
| 3784612 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.73 | 62.0 | 6.18e-01 | 100.0% | 85.3% |
| 3782999 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.71 | 58.0 | 6.14e-01 | 100.0% | 95.2% |
| 3166341 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 25.0 | 3.24e-01 | 91.4% | 82.4% |
| 5019409 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 40.0 | 3.29e-01 | 86.5% | 86.3% |
D3
medium
residues 1-17_116-199
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g27A01 | 3.30.50.20 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › prophage-derive protein ybcO | 0.52 | 27.0 | 3.25e-01 | 95.0% | 75.8% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 36.0 | 3.65e-01 | 73.3% | 80.6% |
| 1x74A04 | 3.30.1540.10 | Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › formyl-coa transferase, domain 3 | 0.52 | 30.0 | 3.19e-01 | 100.0% | 62.6% |
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 29.0 | 3.11e-01 | 74.3% | 63.9% |
D4
medium
residues 18-115
Domain cluster:
rep: NC_007046.1__YP_239474.1__SPV66_ORF004__00014__D36-114
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dq5B00 | 1.10.530.50 | Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 | 0.70 | 54.0 | 4.53e-01 | 81.6% | 75.0% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.69 | 44.0 | 5.19e-01 | 91.8% | 100.0% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.62 | 51.0 | 4.65e-01 | 88.8% | 81.5% |
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.59 | 32.0 | 3.20e-01 | 74.5% | 47.1% |
| 6kd7A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 47.0 | 3.37e-01 | 96.9% | 57.5% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.55 | 42.0 | 3.59e-01 | 80.6% | 60.2% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.55 | 37.0 | 3.27e-01 | 70.4% | 50.7% |
| 1ga3A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 35.0 | 3.39e-01 | 83.7% | 56.6% |
| 1dvgA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 38.0 | 3.01e-01 | 74.5% | 98.6% |
| 3kraC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 43.0 | 3.22e-01 | 91.8% | 70.5% |
| 3snhA02 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.50 | 38.0 | 2.97e-01 | 80.6% | 59.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2990057 | 235.1.1.26 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PlyCA_N | 0.90 | 79.0 | 6.08e-01 | 100.0% | 46.4% |
| 3709485 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.56 | 43.0 | 4.22e-01 | 89.8% | 77.1% |
| 3806684 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 41.0 | 4.26e-01 | 98.0% | 84.4% |
| 3999761 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 46.0 | 4.27e-01 | 98.0% | 72.6% |
| 4614513 | 6056.1.1.0 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like | 0.54 | 37.0 | 4.07e-01 | 72.4% | 92.5% |
| 5071020 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.51 | 37.0 | 3.05e-01 | 76.5% | 84.4% |
| 3175421 | 3922.1.1.312 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF30554 | 0.50 | 31.0 | 2.76e-01 | 100.0% | 41.4% |
D5
medium
residues 393-445_461-485