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NC_049942.1__YP_009909161.1__H3V24_gp70__00050

Bact-Vir

NC_049942.1__YP_009909161.1__H3V24_gp70__00050

Identity

Accession:
NC_049942 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Marienburgvirus› Escherichia_phage_JLK-2012

TaxID: 1147722

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-103
PDB
Domain cluster: rep: MK416013.1__QBQ71686.1__X__00045__D37-105
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03544.20 best TonB_C 56.0 6.10e-15 94.7% 73.4%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u07B00 3.30.2420.10 Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB 0.99 96.0 9.01e-01 100.0% 86.4%
2k9kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.83 75.0 6.69e-01 100.0% 78.3%
1lr0A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.73 65.0 5.52e-01 100.0% 68.3%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.72 65.0 5.89e-01 100.0% 82.4%
1s62A00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.65 58.0 5.27e-01 100.0% 80.4%
2m2kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.64 56.0 4.76e-01 100.0% 71.0%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.62 54.0 4.34e-01 100.0% 81.0%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 41.0 3.58e-01 76.3% 58.3%
2yrbA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 42.0 3.60e-01 84.2% 94.8%
3p1vA01 2.60.40.3250 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain 0.55 43.0 3.61e-01 86.8% 69.6%
1n26A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.76e-01 82.9% 87.5%
7ox5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.67e-01 80.3% 95.1%
3fsyB01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.50e-01 80.3% 65.7%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.53e-01 84.2% 91.5%
6bwsB00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.51 40.0 3.42e-01 89.5% 98.5%
1ex0A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.55e-01 82.9% 85.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970711 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.96 93.0 8.71e-01 100.0% 92.0%
2391752 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.94 89.0 7.99e-01 100.0% 81.8%
2899924 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.91 84.0 8.01e-01 100.0% 86.2%
3964903 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.85 75.0 7.57e-01 96.1% 96.0%
4324302 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.85 73.0 7.27e-01 92.1% 94.9%
4628638 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.83 76.0 7.22e-01 100.0% 90.0%
4096220 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.83 76.0 6.99e-01 100.0% 86.3%
4549660 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.82 76.0 7.46e-01 100.0% 100.0%
4289847 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.82 75.0 6.92e-01 100.0% 90.5%
3839673 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.82 75.0 6.55e-01 100.0% 73.6%
3385499 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.81 74.0 6.85e-01 100.0% 91.6%
3972969 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.80 72.0 6.71e-01 100.0% 95.8%
4338610 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.80 72.0 7.16e-01 100.0% 94.9%
2599555 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.80 71.0 6.36e-01 100.0% 75.7%
4225807 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.76 55.0 5.86e-01 76.3% 100.0%
3974767 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.73 66.0 6.12e-01 100.0% 93.7%
5945 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.73 65.0 5.52e-01 100.0% 68.3%
152223 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.72 65.0 5.89e-01 100.0% 82.4%
4636115 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.72 62.0 6.02e-01 97.4% 97.6%
3166161 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.71 63.0 6.08e-01 98.7% 92.9%
3840130 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.69 61.0 5.91e-01 100.0% 95.3%
3942685 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.69 61.0 5.46e-01 97.4% 76.2%
3968588 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.68 60.0 5.82e-01 100.0% 94.1%
3967921 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.67 57.0 5.67e-01 94.7% 96.2%
3970590 272.1.1.0 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain 0.67 57.0 5.12e-01 97.4% 82.7%
3386099 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.66 58.0 5.60e-01 97.4% 91.8%
1161117 272.1.1.2 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA 0.66 59.0 5.54e-01 100.0% 88.2%
3491636 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.65 48.0 3.89e-01 78.9% 97.9%
1393818 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.63 54.0 5.00e-01 100.0% 84.3%
3471938 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.59 41.0 3.27e-01 72.4% 64.4%
3958028 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.58 42.0 3.98e-01 77.6% 95.7%
4943133 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.19e-01 72.4% 63.1%
3198474 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 38.0 3.29e-01 77.6% 98.5%
3623120 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.18e-01 81.6% 56.0%
5005735 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.35e-01 77.6% 61.1%
3955667 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.50 36.0 3.37e-01 78.9% 99.0%
3856046 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 38.0 3.31e-01 85.5% 73.1%