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NC_049945.1__YP_009909345.1__H3V27_gp02__00002

Bact-Vir

NC_049945.1__YP_009909345.1__H3V27_gp02__00002

Identity

Accession:
NC_049945 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pankowvirus› Stx2-converting_phage_Stx2a_WGPS6

TaxID: 1226262

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 63.0 4.82e-01 100.0% 62.8%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 64.0 5.11e-01 100.0% 50.5%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 58.0 4.45e-01 94.0% 56.2%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.70 58.0 4.42e-01 100.0% 39.2%
6arhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 42.0 2.59e-01 78.0% 25.7%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.58 46.0 4.23e-01 98.0% 81.1%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 4.11e-01 100.0% 61.7%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 3.54e-01 100.0% 33.8%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.96e-01 100.0% 68.5%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 44.0 3.97e-01 98.0% 77.6%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.13e-01 100.0% 70.8%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.55 45.0 3.71e-01 100.0% 57.7%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 41.0 3.02e-01 98.0% 88.6%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 43.0 2.90e-01 100.0% 81.9%
3pvsA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 42.0 3.78e-01 94.0% 63.2%
1o5wB03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.52 40.0 3.51e-01 100.0% 52.2%
3na8A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 36.0 2.32e-01 76.0% 67.7%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950846 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.81 71.0 7.18e-01 100.0% 98.0%
3289439 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 71.0 6.89e-01 100.0% 90.9%
3589675 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 66.0 6.67e-01 98.0% 96.0%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 69.0 6.75e-01 100.0% 90.9%
3960483 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 68.0 6.86e-01 100.0% 98.0%
4994568 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.76 66.0 6.45e-01 100.0% 90.9%
4672676 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 65.0 4.77e-01 100.0% 36.4%
2168161 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 67.0 6.48e-01 100.0% 89.5%
3286117 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 64.0 4.83e-01 100.0% 39.2%
4932995 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.75 66.0 6.65e-01 100.0% 100.0%
5047649 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.75 65.0 6.53e-01 100.0% 100.0%
3945289 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 64.0 4.84e-01 100.0% 60.0%
3278826 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 4.86e-01 98.0% 40.8%
5064906 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 64.0 6.29e-01 100.0% 90.9%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 63.0 5.26e-01 100.0% 75.6%
2527708 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 61.0 4.50e-01 98.0% 46.9%
3288205 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 62.0 5.42e-01 100.0% 62.5%
3958148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 62.0 4.61e-01 100.0% 56.3%
4536234 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 61.0 4.81e-01 100.0% 44.3%
4488952 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 61.0 4.82e-01 98.0% 63.6%
5007668 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 62.0 4.72e-01 100.0% 53.6%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 62.0 5.40e-01 100.0% 83.7%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.73 63.0 4.92e-01 100.0% 46.4%
3290900 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 61.0 4.64e-01 100.0% 39.2%
3980766 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 61.0 4.79e-01 98.0% 63.6%
3589820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 60.0 4.58e-01 98.0% 40.0%
4031764 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 60.0 4.46e-01 98.0% 36.2%
2325046 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 60.0 4.69e-01 100.0% 61.7%
4266122 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 61.0 5.03e-01 100.0% 52.6%
4061721 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 60.0 4.55e-01 100.0% 52.3%
3290830 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 60.0 4.67e-01 98.0% 60.9%
171609 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 59.0 4.49e-01 100.0% 51.1%
4090636 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 60.0 5.48e-01 100.0% 71.4%
4051681 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 60.0 4.50e-01 100.0% 37.0%
4033964 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 4.52e-01 86.0% 48.2%
5000254 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.71 60.0 6.09e-01 100.0% 100.0%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.70 59.0 4.63e-01 100.0% 59.1%
4284807 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 58.0 4.30e-01 98.0% 47.9%
3975516 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 58.0 4.68e-01 98.0% 46.7%
4443612 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 57.0 5.75e-01 98.0% 98.0%
3949463 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.70 59.0 4.60e-01 100.0% 43.5%
None — 0.69 57.0 5.24e-01 100.0% 97.1%
360918 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 56.0 4.41e-01 100.0% 43.6%
3743451 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 3.91e-01 82.0% 46.7%
4934922 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 46.0 4.19e-01 98.0% 78.7%
3801792 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.57 46.0 4.15e-01 100.0% 64.0%
5008984 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.57 48.0 4.10e-01 100.0% 68.9%
4169295 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.57 45.0 3.93e-01 98.0% 66.7%
4943612 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.69e-01 100.0% 42.5%
4073474 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.56 45.0 3.95e-01 98.0% 68.2%
4033708 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.56 44.0 3.86e-01 98.0% 64.4%
4626742 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 45.0 4.09e-01 100.0% 94.7%
4373306 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.56 45.0 4.10e-01 100.0% 82.7%
1883340 101.1.2.211 ↗ alpha arrays › HTH › HTH › winged helix domain › PKMT_2nd 0.56 39.0 3.07e-01 74.0% 52.3%
5077394 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.55 46.0 3.68e-01 100.0% 45.2%
4864568 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.55 44.0 3.66e-01 98.0% 77.4%
4229550 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.55 44.0 3.89e-01 100.0% 72.9%
4155176 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.54 44.0 3.88e-01 98.0% 83.7%
3560879 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.35e-01 100.0% 48.8%
4993642 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.52 37.0 2.35e-01 78.0% 52.6%
2760149 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.52 40.0 3.46e-01 100.0% 51.1%
4471006 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.50 41.0 2.61e-01 100.0% 16.1%