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NC_049951.1__YP_009909789.1__H3V33_gp24__00024

Bact-Vir

NC_049951.1__YP_009909789.1__H3V33_gp24__00024

Identity

Accession:
NC_049951 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lambdavirus› Enterobacteria_phage_O276

TaxID: 2282412

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-151
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 36.0 3.46e-01 73.2% 61.0%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 41.0 3.32e-01 100.0% 43.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 29.0 3.57e-01 80.5% 84.2%
3958613 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.53 31.0 3.54e-01 89.9% 77.3%
4355756 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.50 37.0 3.28e-01 77.2% 70.2%
D2 medium residues 282-355
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fzlA01 1.10.150.790 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.65 52.0 5.03e-01 100.0% 79.3%
1xdpA01 1.20.58.310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain 0.62 44.0 3.98e-01 75.7% 82.9%
3buxB01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.61 48.0 4.05e-01 86.5% 93.8%
2cdqA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.61 46.0 4.32e-01 83.8% 78.4%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 42.0 3.84e-01 75.7% 82.1%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 43.0 4.19e-01 82.4% 69.9%
1kxpD02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 43.0 4.18e-01 90.5% 70.5%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.55 40.0 3.73e-01 79.7% 60.2%
6vynC01 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.53 45.0 4.58e-01 100.0% 98.6%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 38.0 3.52e-01 78.4% 88.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4633539 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.63 55.0 3.61e-01 98.6% 69.5%
4114442 629.1.1.1 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.61 52.0 3.76e-01 94.6% 76.2%
4088889 629.1.1.1 ↗ alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del 0.59 50.0 3.65e-01 94.6% 76.6%
3482000 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.58 42.0 3.49e-01 79.7% 77.9%
3675587 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 39.0 3.32e-01 71.6% 96.7%
3806870 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.55 37.0 3.44e-01 71.6% 52.0%
4929949 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.55 39.0 3.85e-01 79.7% 68.2%
3810044 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.55 39.0 3.98e-01 77.0% 78.7%
3641386 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.54 40.0 3.91e-01 81.1% 71.8%
3515125 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.54 39.0 3.49e-01 77.0% 51.8%
3845840 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 33.0 3.17e-01 82.4% 51.8%
2714225 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.54 47.0 4.50e-01 100.0% 88.2%
3228159 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 38.0 3.03e-01 74.3% 63.3%
3566195 198.1.1.8 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 0.53 45.0 3.96e-01 95.9% 64.3%
3643620 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.53 40.0 3.92e-01 81.1% 76.2%
2889550 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.53 38.0 3.77e-01 82.4% 71.4%
3489682 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.52 43.0 4.38e-01 100.0% 93.3%