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NC_050152.1__YP_009914534.1__H7U13_gp100__00056

Bact-Vir

NC_050152.1__YP_009914534.1__H7U13_gp100__00056

Identity

Accession:
NC_050152 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-138
PDB
D2 high residues 266-316
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08775.17 best ParB 65.2 1.20e-17 98.0% 37.3%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 55.0 4.70e-01 100.0% 55.7%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 55.0 4.27e-01 100.0% 44.2%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.64 52.0 4.19e-01 90.2% 96.0%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 48.0 3.12e-01 90.2% 28.0%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.61 47.0 3.61e-01 88.2% 38.3%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 50.0 4.31e-01 100.0% 59.1%
2m38A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.50e-01 90.2% 91.1%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 43.0 2.93e-01 78.4% 40.7%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.59 44.0 3.27e-01 82.4% 79.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.58 47.0 4.25e-01 98.0% 70.5%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.58 47.0 3.48e-01 94.1% 89.0%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 45.0 3.77e-01 88.2% 48.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.96e-01 92.2% 88.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.45e-01 88.2% 88.5%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 47.0 4.03e-01 96.1% 72.1%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 2.56e-01 84.3% 41.7%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 3.65e-01 98.0% 72.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 45.0 3.23e-01 92.2% 86.7%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 2.72e-01 92.2% 40.6%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.56 47.0 3.65e-01 94.1% 42.9%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.33e-01 88.2% 44.2%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.49e-01 90.2% 82.9%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 41.0 3.00e-01 78.4% 30.5%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.08e-01 82.4% 75.6%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 46.0 3.37e-01 100.0% 91.4%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.38e-01 82.4% 94.5%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 40.0 2.58e-01 80.4% 17.2%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 2.46e-01 76.5% 54.5%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.88e-01 100.0% 20.2%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.43e-01 84.3% 97.7%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.37e-01 90.2% 68.9%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.52 42.0 3.00e-01 92.2% 56.0%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 40.0 3.20e-01 96.1% 37.7%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 39.0 2.55e-01 82.4% 18.6%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.67e-01 96.1% 29.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 37.0 2.93e-01 78.4% 97.4%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.45e-01 100.0% 11.1%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 40.0 3.34e-01 98.0% 71.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3984734 3433.1.1.1 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › ParB 0.95 86.0 8.68e-01 96.1% 98.0%
4941640 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 51.0 3.65e-01 90.2% 28.4%
5048565 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.65 53.0 3.82e-01 92.2% 64.0%
4017732 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.65 46.0 3.38e-01 78.4% 79.3%
3257177 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.64 52.0 3.03e-01 100.0% 37.3%
11121 213.2.1.1 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy › Ivy 0.62 48.0 3.66e-01 88.2% 38.6%
4999918 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.60 48.0 3.19e-01 88.2% 64.8%
3797547 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 49.0 3.58e-01 100.0% 87.7%
3801480 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 47.0 3.40e-01 92.2% 65.8%
5071337 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.57 47.0 3.77e-01 92.2% 84.8%
4030625 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.57 44.0 2.95e-01 88.2% 42.6%
3990109 2484.1.1.102 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 0.57 40.0 2.88e-01 90.2% 27.4%
4983901 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 44.0 3.34e-01 86.3% 100.0%
4001973 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 3.25e-01 84.3% 90.8%
3898197 220.1.1.192 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C 0.57 44.0 3.30e-01 90.2% 74.5%
3927286 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 38.0 3.48e-01 72.5% 64.0%
3421657 5.1.10.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.56 38.0 3.21e-01 88.2% 42.4%
4002601 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.33e-01 96.1% 70.0%
3995911 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 45.0 3.88e-01 100.0% 55.3%
3668547 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.56 44.0 3.01e-01 100.0% 30.2%
4804226 9.1.1.11 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.55 42.0 3.97e-01 90.2% 77.9%
3972580 331.1.1.3 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N 0.55 44.0 3.87e-01 94.1% 58.7%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 3.47e-01 100.0% 77.2%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.77e-01 86.3% 82.7%
3805156 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 44.0 3.57e-01 100.0% 44.5%
3592221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.46e-01 92.2% 79.7%
3433847 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.54 43.0 2.75e-01 96.1% 26.0%
3937267 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.54 45.0 3.16e-01 100.0% 64.1%
3508601 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.54 47.0 3.24e-01 100.0% 65.3%
3940020 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 2.97e-01 80.4% 35.4%
5055694 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.30e-01 90.2% 87.8%
3929330 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.53 43.0 3.25e-01 92.2% 66.2%
3325733 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 35.0 3.60e-01 78.4% 72.0%
3216765 2484.1.1.297 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3, PF29688 0.53 44.0 3.14e-01 100.0% 70.6%
3882636 214.1.1.11 a+b two layers › SH2 › SH2 › SH2 › PF27628 0.52 39.0 3.01e-01 84.3% 78.5%
4822969 3618.1.1.0 beta complex topology › Flagellin beta sheet domain › Flagellin beta sheet domain › Flagellin beta sheet domain 0.52 41.0 3.85e-01 98.0% 70.0%
4962190 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.52 46.0 3.44e-01 100.0% 64.6%
4953226 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 44.0 4.07e-01 94.1% 76.9%
3706905 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.74e-01 98.0% 88.2%
4216580 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.51 43.0 2.85e-01 96.1% 93.5%
4001056 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.51 43.0 3.56e-01 98.0% 85.0%
3498476 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.45e-01 100.0% 83.3%
3173378 109.4.1.338 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.51 45.0 2.89e-01 100.0% 35.5%
185388 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 42.0 2.92e-01 100.0% 75.0%
4135153 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.50 36.0 3.28e-01 80.4% 97.3%
5065528 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.50 41.0 3.79e-01 100.0% 70.0%
3742045 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.50 42.0 3.18e-01 96.1% 88.5%
4026653 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.50 42.0 3.32e-01 96.1% 71.8%
D3 medium residues 146-256
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08775.17 best ParB 44.9 2.30e-11 56.8% 53.2%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vwbA00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.86 80.0 7.87e-01 99.1% 97.4%
3mkzN00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.81 73.0 7.33e-01 99.1% 97.3%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 48.0 4.84e-01 92.8% 74.3%
6sdkA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 52.0 5.53e-01 100.0% 100.0%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.64 46.0 3.45e-01 74.8% 41.6%
3vr4B04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.61 45.0 4.14e-01 78.4% 98.0%
6qumA04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.58 43.0 3.94e-01 78.4% 98.7%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 33.0 3.69e-01 88.3% 78.8%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.52 38.0 3.92e-01 100.0% 82.7%
3memA02 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 40.0 2.97e-01 82.9% 66.1%
4axzA00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.51 46.0 3.71e-01 100.0% 68.3%
4bg5B00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.50 44.0 3.71e-01 100.0% 76.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979277 101.1.1.44 alpha arrays › HTH › HTH › Three-helical HTH › ParB 0.95 92.0 8.75e-01 100.0% 92.8%
5040755 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.79 58.0 6.02e-01 95.5% 80.0%
1414245 101.1.1.78 alpha arrays › HTH › HTH › Three-helical HTH › SoPB_HTH 0.79 72.0 7.13e-01 100.0% 95.7%
4148139 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.71 35.0 3.10e-01 70.3% 34.8%
3944883 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.69 56.0 5.91e-01 99.1% 98.0%
5073613 3317.1.1.2 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB 0.62 51.0 4.99e-01 100.0% 81.7%
5032172 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.56 45.0 4.52e-01 100.0% 85.2%
4456395 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.55 48.0 3.63e-01 100.0% 78.3%
4958599 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.54 48.0 3.63e-01 100.0% 78.5%